RNA id: TU152519


Basic Information

Item Value
RNA id TU152519
length 497
RNA type TUCP
GC content 0.55
exon number 3
gene id G113130
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8944477 ~ 9002568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGTGTACAGGGTCTCTGGGGGGCTCGGACTCTGATGTGGCGCTACTGCTGCCTTCATTGCTGTGTGACGGCTCAGAGGGACGCTGCGAGTCTGAAGAGGCTCCACACACATTGTCCTCAGCGTTGGAGGCTTCGGATGGCTCATCCTCCCCTGCTCCCTCTTCTGCCTCCCTGCTCTCCTCGttactctcctctcctccccttaTCCCGCTGTCACCAGCATCATCCTCATCTTCAtcatcctcttcttcttcttccttatAcccctcttcttcttcttcttcgtcttcttcctcctcctcttcctcttcaccTTCGTCCTCCTGCTTCTCCTCCCCCTCTTTGCTCTCACGGCTCTCGCTGTCCGTGTCGATCACGATGACGTCCCGAACAATAGCGGAGCCCTGAGAGGACATCATATCGGAGGGGACAGACTGGGACACTTCCTCGATGTCTTCGTCATCTTCAGCTAAAGTGGGGTAACAATCCTCTGGAA

Function

GO:

id name namespace
GO:0006403 RNA localization biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640770.1 lncRNA upstream 32042 8967470 ~ 8969848 (+) False LOC120568741
TU152523 lncRNA upstream 32103 8967289 ~ 8969787 (+) True LOC120568741
XR_005640769.1 lncRNA upstream 32693 8967470 ~ 8969197 (+) False LOC120568741
TU152521 lncRNA upstream 44618 8955878 ~ 8957272 (+) True G113131
TU152458 lncRNA upstream 174441 8826367 ~ 8827449 (+) True G113092
TU152539 lncRNA downstream 6463 9009031 ~ 9009798 (+) True G113148
TU152567 lncRNA downstream 35325 9037893 ~ 9046432 (+) True LOC120569003
XR_005640818.1 lncRNA downstream 35391 9037959 ~ 9046432 (+) False LOC120569003
XR_005640819.1 lncRNA downstream 35632 9038200 ~ 9046432 (+) False LOC120569003
TU152638 lncRNA downstream 150433 9153001 ~ 9162545 (+) True G113240
XM_039816141.1 mRNA upstream 5734 8989441 ~ 8996156 (+) True prg4a
XM_039814531.1 mRNA upstream 46178 8945102 ~ 8955712 (+) True LOC120567618
XM_039815901.1 mRNA upstream 81425 8870742 ~ 8920465 (+) True LOC120568389
XM_039815900.1 mRNA upstream 81425 8870742 ~ 8920465 (+) False LOC120568389
XM_039815902.1 mRNA upstream 81426 8904173 ~ 8920464 (+) False LOC120568389
XM_039816786.1 mRNA downstream 25989 9028557 ~ 9036694 (+) False odr4
XM_039816787.1 mRNA downstream 26010 9028578 ~ 9036694 (+) True odr4
XM_039816790.1 mRNA downstream 26022 9028590 ~ 9036694 (+) False odr4
XM_039816788.1 mRNA downstream 26195 9028763 ~ 9036694 (+) False odr4
XM_039816792.1 mRNA downstream 45598 9048166 ~ 9061933 (+) False dpydb
TU152498 other upstream 100283 8895927 ~ 8901607 (+) False pdca
unassigned_transcript_548 other upstream 107834 8893982 ~ 8894056 (+) True trnan-guu_7
unassigned_transcript_546 other upstream 111531 8890286 ~ 8890359 (+) True trnan-guu_5
unassigned_transcript_545 other upstream 119103 8882714 ~ 8882787 (+) True trnan-guu_4
unassigned_transcript_544 other upstream 122537 8879279 ~ 8879353 (+) True trnan-guu_3
unassigned_transcript_550 other downstream 535512 9538080 ~ 9538151 (+) True trnaq-cug_7
unassigned_transcript_551 other downstream 536108 9538676 ~ 9538747 (+) True trnaq-cug_8
unassigned_transcript_552 other downstream 536563 9539131 ~ 9539202 (+) True trnaq-cug_9
unassigned_transcript_553 other downstream 537312 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_554 other downstream 538573 9541141 ~ 9541212 (+) True trnaq-cug_11

Expression Profile