RNA id: TU152826


Basic Information

Item Value
RNA id TU152826
length 1112
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G113350
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9370975 ~ 9423396 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCATTGACTGCAGAGCTGAATGTGTTCTGGATGGTCTCTAACTCTCCCTTGTCTTCATCAGTGAGGGAACCCACAGGTAGGACCAGGATGAAGGCATGAACTCCCTCAGGATCACAGAGGGAGATAGACCTGAAGGATTCCTCCATCACTGCCTCCTGAGGTTCTCCATACAAGGCAGGCAGCTCCACCAGGGAAACCCAACGTCCACACACCTCTCCCTGATGTTTAACACACTCTGATGAGTTGGACACTGAAGGAAACTCTGTCTGACCTAAAATGGCCTTGGCTGCTGAAGTCTtccctgctcctctcctcccaCAGAGAACCAGGTTCAAAGCTGGTTTGATGTGTTCAGACACAGGCGGTggggttttgttgtttttatttgctgtTTCTTCAATCTTCTCCATTAATGATCTATGGTTATCTTCAGACATGCTGTAGTGTCTTCCTCCACAGTCTTTAAGGAGTTcattaacagggactctcatTTCTTCCCACTGATGTGTCACAATGATCATTGAGTAGTCAAAGGCATCTTGACCAAACAAACTCAGGATGGACTtcagtgtttgtctgttcttCTCTGTGAATTCAGAAGGCTTCACTAACAGCAGCAGAACATTTGGTCCAGGAGGACAAAGAGTCACACAGTTTTTCACCTCTCTTCTCAAGTTCTCCTCAGACAGACTGAACATGTCTGGAGTTTTCACGACCGTTAATGGTTTTCCTCTCCACTCTCCACAGTTTGCCACACATTGCCTGGTTGAGAAAGTTCTTTGGTTATGAAAAAATTGTTTCCCGATGATGAAGTTACCaatttttgtctgtttgtcctcGCTTTTTCCCAGCAGCACAATCCTAAATGCAGATGCTGTaataaaacagagagaaagatgagATGACATAAACTCACTAAGAGGCTGTAATCACTacatcagaggtggaaagtaaccaaatgttgtgtggactagccagaccttactccccagcactgtggagataggtctggcaatgcaagactagttgAAGTAAACAGCACTTGTTGATCCTTTCTGCTTTCTTCTATTCACCAGCTAACACTCTAATATTATTCACAGTTAACCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152657 lncRNA downstream 202556 9114513 ~ 9168419 (-) False chd7
TU152589 lncRNA downstream 307736 9060895 ~ 9063239 (-) True G113194
TU152561 lncRNA downstream 397315 8971608 ~ 8973660 (-) True G113168
TU152518 lncRNA downstream 427223 8943485 ~ 8943752 (-) True G113129
TU152506 lncRNA downstream 500052 8870700 ~ 8870923 (-) True G113118
XR_005640717.1 lncRNA upstream 6017 9429413 ~ 9431614 (-) True LOC120568402
TU152852 lncRNA upstream 10246 9433642 ~ 9434515 (-) False G113364
TU152853 lncRNA upstream 10246 9433642 ~ 9435193 (-) True G113364
XR_005640715.1 lncRNA upstream 36107 9459503 ~ 9459924 (-) True LOC120568399
TU152878 lncRNA upstream 113241 9536637 ~ 9666053 (-) True LOC120567814
XM_039815914.1 mRNA downstream 12442 9352318 ~ 9358533 (-) True cryz
XM_039815911.1 mRNA downstream 18811 9343577 ~ 9352164 (-) False lrrc53
XM_039815910.1 mRNA downstream 18811 9343577 ~ 9352164 (-) True lrrc53
XM_039815633.1 mRNA downstream 139958 9200888 ~ 9231017 (-) True rab2a
XM_039816406.1 mRNA downstream 176103 9116824 ~ 9194872 (-) False chd7
XM_039815913.1 mRNA upstream 69822 9493218 ~ 9510497 (-) False LOC120568397
XM_039814857.1 mRNA upstream 110869 9534265 ~ 9537562 (-) True ankrd45
XM_039814856.1 mRNA upstream 128596 9551992 ~ 9563741 (-) False fitm1l
XM_039814855.1 mRNA upstream 128596 9551992 ~ 9558745 (-) True fitm1l
XM_039814914.1 mRNA upstream 251488 9674884 ~ 9788220 (-) False map4l
unassigned_transcript_549 other downstream 475852 8895050 ~ 8895123 (-) True trnan-guu_8
unassigned_transcript_547 other downstream 478971 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_540 other downstream 497493 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_538 other downstream 498470 8872434 ~ 8872505 (-) True trnag-ucc_9
TU152428 other downstream 580933 8780452 ~ 8790042 (-) True G113070
TU152848 other upstream 83652 9507048 ~ 9510481 (-) False LOC120568397
TU153067 other upstream 1463611 10887007 ~ 10888847 (-) False LOC120567758
unassigned_transcript_557 other upstream 1463693 10887089 ~ 10888952 (-) True LOC120567758
TU153382 other upstream 2794666 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 3177784 12601180 ~ 12602909 (-) False nedd8l

Expression Profile