RNA id: TU152954


Basic Information

Item Value
RNA id TU152954
length 783
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G113446
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9842701 ~ 9843483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaacccttgtgttgacttcgggtcacattgacccgttttcaatttttgttttatatcagaaaatatgggaaagaaaaattttacaatttaaaatgttggaaaaagcaaaaagaaactgtgaaaaaaaaaaggcgtcaatTTTTTTACCAGAAACCTCAGCATTTGAGCCTGTGATATTACTGGTAAAGGACTGAAAGCTATAGGAGGCAGAACAAAcccagaaaatgtttttaattagcCGACTGTTtcttatgctgcgttcatgccacctcggaataacagggaccgcccccgtggttacgttgtttttccaactGGCAGatttcacatggtcgggatgcgttttcttcttcttctgttatattggcgttgagcataacaactttttgcatgactgccaccaacagttggccgtagcctagagcatcaggtgtgtgaaaacatggaggccacaataacaaaagatctgctgctgttttcttatacgagcatccaaacagcacatcgccaggtgtttgtgttatctgcaggacaacgaatgggaaaagacacggataaggtgtttttttatacatataggcctatttatgaataatttgaaacatgttatgtctgtgtatgtttcttggcagaggcatttgtccacaataaacagtttattgtcattgaaatattttcagtgaaccaaagtcgcctccatcaaacgtcagctgtcaacgcgtcaccaactgggaaactcggttaacaaaatcaaaaaaaatgtCGAGGTCTATGAACGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152934 lncRNA upstream 28459 9811980 ~ 9814242 (+) True G113429
TU152803 lncRNA upstream 140051 9690488 ~ 9702650 (+) True G113338
TU152798 lncRNA upstream 158963 9673705 ~ 9683738 (+) True G113337
TU152800 lncRNA upstream 161073 9673705 ~ 9681628 (+) False G113337
TU152752 lncRNA upstream 372604 9469492 ~ 9470097 (+) True G113306
XR_005640829.1 lncRNA downstream 994020 10837503 ~ 10839103 (+) True LOC120569032
XR_005640827.1 lncRNA downstream 997034 10840517 ~ 10843220 (+) True LOC120569030
TU153001 lncRNA downstream 1043509 10886992 ~ 10887667 (+) True G113492
TU153008 lncRNA downstream 1082973 10926456 ~ 10928243 (+) True G113498
TU153095 lncRNA downstream 1203073 11046556 ~ 11055806 (+) False LOC120567863
XM_039816374.1 mRNA upstream 1923 9826159 ~ 9840778 (+) True klhl20
XM_039816375.1 mRNA upstream 1923 9827219 ~ 9840778 (+) False klhl20
XM_039814497.1 mRNA upstream 18996 9816589 ~ 9823705 (+) False LOC120567595
XM_039814496.1 mRNA upstream 18996 9818077 ~ 9823705 (+) True LOC120567595
XM_039814859.1 mRNA upstream 178100 9650411 ~ 9664601 (+) True LOC120567812
XM_039816837.1 mRNA downstream 455223 10298706 ~ 10865382 (+) False astn1
XM_039816835.1 mRNA downstream 455224 10298707 ~ 10754254 (+) True astn1
XM_039816836.1 mRNA downstream 455224 10298707 ~ 10754254 (+) False astn1
XM_039816838.1 mRNA downstream 455224 10298707 ~ 10754254 (+) False astn1
XM_039816840.1 mRNA downstream 1024559 10868042 ~ 10881652 (+) True cop1
unassigned_transcript_555 other upstream 300571 9542059 ~ 9542130 (+) True trnaq-cug_12
unassigned_transcript_554 other upstream 301489 9541141 ~ 9541212 (+) True trnaq-cug_11
unassigned_transcript_553 other upstream 302750 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_552 other upstream 303499 9539131 ~ 9539202 (+) True trnaq-cug_9
unassigned_transcript_551 other upstream 303954 9538676 ~ 9538747 (+) True trnaq-cug_8
TU153003 other downstream 1042112 10885595 ~ 10886182 (+) False LOC120568835
unassigned_transcript_556 other downstream 1042117 10885600 ~ 10886478 (+) True LOC120568835
TU153118 other downstream 1489114 11332597 ~ 11343691 (+) False pkia
TU153339 other downstream 2313968 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other downstream 2314033 12157516 ~ 12160255 (+) False LOC120568189

Expression Profile