RNA id: unassigned_transcript_557


Basic Information

Item Value
RNA id unassigned_transcript_557
length 684
RNA type C_gene_segment
GC content 0.54
exon number 2
gene id LOC120567758
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 10887007 ~ 10888952 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAAACTGGTAATGTGTTtggtgagtttgtttgtgtcaaagtcagagagccgtgtctctctacagtgagaggtttttgtacggCGGCTCAGtgactttgtatcactgtggtacACGTTCGGTGAAGGAACCAGACTGGAATTTGGAAGTGATGTCCGTCCCACCCTGACAGTGCTGCCCCCCTCCAGTGAGGAGCTGCTGCAGGGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGTGGACtgcggcggcagcagcagcagcagctgggaggagagcaggagcCCCGGGGTGATGCAGAAGGATGGCCACTACAGCTGGAGCCGCACCCTGAGGCTCCCTGCAGACCAGTGGAGGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGACTCCAgtctcagagacactgaggagggACCAGTGTTCCCAGTCCTGACCTGACTCACTGGGACTCTGCTACTGGTTTCACTCTGCTACTGCTCTCAGtctgcactctctctctctctctctctctctctctctctctctctctctctctctctctctctcttgtcagACTTAAAAGATTGAAATAGTGATATTTTCTTGCTCATAATGACGCCGACAGGCTTTTGATTTAATAAAGATTGTTTTCTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640830.1 lncRNA downstream 475759 10410527 ~ 10411330 (-) True LOC120569033
TU153024 lncRNA downstream 508288 10372699 ~ 10378801 (-) False LOC120569031
XR_005640828.1 lncRNA downstream 508317 10377960 ~ 10378772 (-) True LOC120569031
TU152977 lncRNA downstream 845631 10040723 ~ 10041458 (-) False brinp2
TU152966 lncRNA downstream 847204 10039657 ~ 10039885 (-) True G113457
TU153078 lncRNA upstream 22548 10911500 ~ 10912177 (-) True G113553
TU153165 lncRNA upstream 230050 11119002 ~ 11123476 (-) True G113627
TU153197 lncRNA upstream 435654 11324606 ~ 11329834 (-) True LOC120568658
XR_005640742.1 lncRNA upstream 435779 11324731 ~ 11329834 (-) False LOC120568658
TU153204 lncRNA upstream 468782 11357734 ~ 11403230 (-) True G113653
XM_039816834.1 mRNA downstream 25481 10755896 ~ 10861608 (-) True pappa2
XM_039816764.1 mRNA downstream 620011 10040686 ~ 10267078 (-) True brinp2
XM_039814913.1 mRNA downstream 1098869 9674884 ~ 9788220 (-) True map4l
XM_039814639.1 mRNA upstream 33616 10922568 ~ 10996589 (-) False col15a1b
XM_039814637.1 mRNA upstream 33616 10922568 ~ 10975036 (-) False col15a1b
XM_039814636.1 mRNA upstream 33616 10922568 ~ 10975035 (-) True col15a1b
XM_039814638.1 mRNA upstream 33616 10922568 ~ 10975034 (-) False col15a1b
XM_039816429.1 mRNA upstream 117927 11006879 ~ 11043741 (-) True LOC120568748
TU152848 other downstream 1376608 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 1391337 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 1483477 9401742 ~ 9403612 (-) False LOC120568397
unassigned_transcript_549 other downstream 1991966 8895050 ~ 8895123 (-) True trnan-guu_8
unassigned_transcript_547 other downstream 1995085 8891931 ~ 8892004 (-) True trnan-guu_6
TU153382 other upstream 1329110 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 1712228 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 1871963 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 2195609 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 3724661 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile