RNA id: TU153197


Basic Information

Item Value
RNA id TU153197
length 1430
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120568658
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11324606 ~ 11329834 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGAGGCTCCTCCCCAAACATTCATTAATGGTGGTCCAGACGAAGTTACAAAGAAAAGGAGGGATTACACGGATGTTGCCCAAACAATGGATGAAATGCCTGGTGCTCAAGAAAGCAAGAGACACAACGTGTTTACTAGTATGAGGAGGATCTCTAGTTCCTGTGCTCCCAGTTGTGTAGGCTACACTCCGTCATGACTGTATGGTTTGTGGCAGTTCGGAGTGGATCCATACAACTTGCTGTCTTCCGACAGAATCGTCAGTAAACGTTAGTTTTCACTCTCCAGCGGACAAAGATTCTCTCTGCCCAGAGCTGCTTCCTGTCTCTTTGATTTTTTTGGATGAAGGTTAAGCTGCTTCTACAGAAAAGGACATGATTCAGACCTCAGCGGAGGCATTGTTATGTTTTATTCACTGCAGAAGATGTGGTTAGCTGTAACCTGAGTAGCCCTGAGTCTACACAAGAATGTATCAGAggaggagctgctctggagataAGAAATAATCTCTGCATTAATCTCACTCTGTAAATTTTAATTAAGGCCAAGAGCACTACTTATTATAGCGAGTTAGTTTACTTGGGACATTTGGATGATAAAGTTGGAATGGGTTAAATATATAGATTAATGTACAGTAATTTTACATTTGACAGGTGGAACAGTGTCTTCAAAATCGCATCACTATCAAAGAGATAATGCAGCAATACATTAAATAACAGATCAGCTAACGGGCAACGATTGAACCTGCGGTTAGTATCAAAATTGATTGACTGGTTTTATATACACAAACTCTATCTTATTCAATCACTATCAGCAGTCTTTCTAAAGCTTGGAATAAAACCGGATGGAATTTTTGAATTACAATAAGGTCagctgacaaacacacagaatgcTGATTTCCCATCTAAGTGTAAATGCAGCCATGGCCGCGGTTGGACTGTACTTATgcacagcggtgctttgagctaaacgATAATGGCTGTGTTTCAGTAGTGGTTCAACATGCCCTCGTTGACTTCCCCTAAGCACCTGCCCTCGGGGGAATCCCCACCGCCGTCTTATGTGTTGTTCCAACTGTCTGAAAAACTGAAGTGAACTTGTTGAGATCGACCCTCGGAGGGCTGAAGGAGCGAGTGAACAATGATGGTCCCTCCAGAGGTGGATATcgcccacaatgcattgcagttATGCATTTGGTGCAAGAAAACACATCCATGGTTAGGTGGCAGTAATGTACAACTTCTACAACTCCTGTTGCTGACCACCGAAGAAGGACaagatgaataaatacatttcaacTTTTTAGTCGCCTCATTGTTAGCTTGATATTTTACTGAAACATGTAATATAACTGTCAATTAATATTtactttatacattttatttactatAGTTGTTTGTGTGATTTATGTATTTCCAACATTATCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153165 lncRNA downstream 201130 11119002 ~ 11123476 (-) True G113627
TU153078 lncRNA downstream 412429 10911500 ~ 10912177 (-) True G113553
XR_005640830.1 lncRNA downstream 913276 10410527 ~ 10411330 (-) True LOC120569033
TU153024 lncRNA downstream 945805 10372699 ~ 10378801 (-) False LOC120569031
XR_005640828.1 lncRNA downstream 945834 10377960 ~ 10378772 (-) True LOC120569031
TU153204 lncRNA upstream 27900 11357734 ~ 11403230 (-) True G113653
TU153207 lncRNA upstream 35537 11365371 ~ 11367604 (-) True G113656
TU153220 lncRNA upstream 94350 11424184 ~ 11446271 (-) False G113667
TU153221 lncRNA upstream 116090 11445924 ~ 11446271 (-) True G113667
TU153233 lncRNA upstream 205165 11534999 ~ 11540267 (-) True G113677
XM_039816120.1 mRNA downstream 3603 11151427 ~ 11321003 (-) True ctnnd2b
XM_039816130.1 mRNA downstream 38086 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816125.1 mRNA downstream 38086 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816129.1 mRNA downstream 38086 11151427 ~ 11286520 (-) False ctnnd2b
XM_039816122.1 mRNA downstream 38086 11151427 ~ 11286520 (-) False ctnnd2b
XM_039815056.1 mRNA upstream 61050 11390884 ~ 11462612 (-) False zswim5
XM_039815055.1 mRNA upstream 61050 11390884 ~ 11462611 (-) True zswim5
XM_039816321.1 mRNA upstream 170530 11500364 ~ 11501738 (-) True LOC120568667
XM_039815499.1 mRNA upstream 189635 11519469 ~ 11524837 (-) True selenop2
XM_039815501.1 mRNA upstream 198009 11527843 ~ 11530805 (-) True si:ch73-382f3.1
unassigned_transcript_557 other downstream 435654 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 435759 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 1814125 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 1828854 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 1920994 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 888228 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 1271346 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 1431081 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 1754727 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 3283779 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile