RNA id: TU153233


Basic Information

Item Value
RNA id TU153233
length 1653
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G113677
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11534999 ~ 11540267 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCTATGAGCATTCTACTTTATTGAAGGCACATCAgtaaaaaaagaacacaatAGTTGTTCTGGACATATACATTCATTGTCAATCACATTTTCCTTGAACTAAATCAATTGTGTATCACATATTAGGGCTGGGTGTTCTACAATTtatggaccccccccccccaaaaaaaaaaaagtctgattaAGGCAACAAttgagatttcttttttaattcctTTTTGAATTTTGTCGCCTTTATTTTAAGTGCCCTTGTGATCTAATATTAATGACAAATTGTTAGATTAAAACTATacattgtaaatgtaataaatagaAGATATAAATGATTATCCAATACAGCCTCAGATTTAGAATCACTACTACTAATGTACAATGCATCACATTTCACAtcaatattaaatatttaaattatcctaaaggatttattttccaatgttgtttgtattgttatttttacaTATAGTATATGACTGTTGCAAAAACATTGGAGTTGGCAGGGTTAGGCCACACACTTCAGGGGTATATGAATTACAGTATTTCATATGGCTGGTTTTCTAGACATGGATTAGTACACCTAGACCACATGTGTGGAACTTTGCCATTATGTGCACTGGGACAGAAAAGCATTGAGATCTTGTACTAGTTCAGCTCAAATTCCAGCAGTCCTGCAAAAAAATGTCAGCCTCATTTTCTAACTGATTTTTCAGACCACTGAGAAAAACCAAGTTGGTCTGATTTGGTCTGATTTTCTTCGCAAGACAGCTTAACAGAGGGTTAGCAAAATCGTGTGAGCTTCTCTCCGCGTTTCATTGATTCGGAACCCTCTGTCTCTTCTTTGTCTCGTTCCCTTCCAAGTCCTTCATGCAAGCAACCAGGAAACTGCGGCACTTCAGAGCATACTGCTCAGGAAAGTCCCGGAAATGACCAACGTGGGGACtggaaacaaaatcaaaactgTCCACCGGGACGCCTTTCTGCTTCAGGGTCTCCACAAAGACCTTGATGTCTGTGTGCCTGATCACCTGGTCAGCTCGGGAGTACAGGTAGAAATGAGGCCAGGCGGGCGGACGCTCCTGCACGGCGTCATAGTGGTTCTTGTGGATGTACTTGGTCAAGGGGTACAGCACGACTCGCAACAGGAAAACAGTCACTGCGAATAGCGCCAAGAGGACGTACCTTAAAACAGGAGTTATTTTGGGCCCCAGGGTGGCCGCCAGTGCACGCAGGGCCCCGCGGACGTTCCCACTACCTGGGGCACTGTCCACTAAGGCCCCAATCACACACAAGGAACTGAACTGTTTATCATTGTGCAACAAATCTGCAATGTAACGGTACAGCATGAAGCCACCATTGCTGAATATGTGAAAGAAAATAGGACTGTTCTCCACCTCATAGTCATAGAGAATCTCCAGCAACTTAAGGGCCGTACTGCTCAGCTCCTTGTAGCCAAACGACTCTGAGATGAAGACTGTCTTCAAGGGAGCGGTGTAGCGGATGGTGACACATCCCTAAAAGCATACTCCAAATAGGAGGCAGTGAGCCGGAGCTCAAATTCAGTGACATATTTGGTGTCATAGATGCCAGCAGGAAACATCTCAGACAGGTCGGATGTGAAGTTGGCCAAGCGGTCAGGCAGATGTGCATAAAAac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153220 lncRNA downstream 88728 11424184 ~ 11446271 (-) False G113667
TU153221 lncRNA downstream 88728 11445924 ~ 11446271 (-) True G113667
TU153204 lncRNA downstream 131769 11357734 ~ 11403230 (-) True G113653
TU153207 lncRNA downstream 167395 11365371 ~ 11367604 (-) True G113656
TU153197 lncRNA downstream 205165 11324606 ~ 11329834 (-) True LOC120568658
TU153258 lncRNA upstream 70330 11610597 ~ 11610879 (-) True G113700
TU153268 lncRNA upstream 255438 11795705 ~ 11876028 (-) True G113708
TU153285 lncRNA upstream 418183 11958450 ~ 11958661 (-) True G113722
TU153295 lncRNA upstream 451477 11991744 ~ 12035749 (-) True G113729
TU153297 lncRNA upstream 480686 12020953 ~ 12059116 (-) True G113731
XM_039815501.1 mRNA downstream 4194 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039815499.1 mRNA downstream 10162 11519469 ~ 11524837 (-) True selenop2
XM_039816321.1 mRNA downstream 33261 11500364 ~ 11501738 (-) True LOC120568667
XM_039815056.1 mRNA downstream 72387 11390884 ~ 11462612 (-) False zswim5
XM_039815055.1 mRNA downstream 72388 11390884 ~ 11462611 (-) True zswim5
XM_039816569.1 mRNA upstream 569005 12109272 ~ 12113247 (-) False pigr
XM_039816568.1 mRNA upstream 569005 12109272 ~ 12113247 (-) True pigr
XM_039816570.1 mRNA upstream 576535 12116802 ~ 12122078 (-) True dad1
XM_039815524.1 mRNA upstream 591170 12131437 ~ 12152081 (-) True tgm1l1
XM_039816553.1 mRNA upstream 636590 12176857 ~ 12207670 (-) True rem2
unassigned_transcript_557 other downstream 646047 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 646152 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2024518 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2039247 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2131387 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 677795 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 1060913 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 1220648 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 1544294 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 3073346 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile