RNA id: TU153268


Basic Information

Item Value
RNA id TU153268
length 1581
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G113708
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11795705 ~ 11876028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGCTTTATTTCAGTTAAAACAGGAGCATTTCTCTTCTCTATGTCTTATTTTACAGCCCAGTTTGGGTGAACAAGACCAATCGTGGTATTTgagaagttttattttttcatttttttcagcatttcttACAACAATACAGACGTCACAGAATACATAGTTTTACAAACACAAAGCACACCACCACCttggttgctgctgctgccgtaaAGGGAAGGGGGAAATGCTGCGGGTTTTGGAAGTTGCCAGTTCAGCCTTGGCCATTCCTCTTTTCCAGACACTTCCCTCATCCGTTATAGCTAGAAAGAACCTGCCCTTCGGGGTTGCCATTTTGGAACCTTTTTGCAGCATAGCAGTATGAGAACAATGGAAAAAAGCTTTCTTTTGAGACATGTAGGGGTAAAAACAAAACGTTTCTTGACTATGATCTGAACATGATGTTACTCCAACTGAGAGGAAGCAGAAATGGAGGTTAAAAGAAGAGGCTCAGTTGGACATTGTTGCAACTAAAGAGCAGTCCCATTGTTCTGCTTGTTCGCAGTAAATCTTGGGCAATCGGAATCTTCTCCATTCCATAAAACTAACAAAAGATCTTTCCTTGCTTCACGTTCTACAGTTTTTCAGGGTACTCTGCAGAAAAATTACACCACCTAAATCTTGACCATCTAGTCTCGAGTAGTTTATTATTACTTAAATGTTTTATTCCTGTACAGTGAAATAACGGATCTTcaaatgatctttttttttaaaaaatacagaagGCTTCTTTTATTCCagccattttttttccccaaacatCATTCCCAGACCCTTCCAACTTACAACAGGACTTTGATATTATATACTTCTGTGTGTCTGCTGATAGtaacgtgtgtgcatgtgtgtgtacatatgtgtgtgtgtgtgtgtatgaactCTATGTCATTTACACCCAACATTGTAAACATACATAGAACTATATTACATGTGCTTGCACTGCATCTTGGAGGGGGAGAAATTTTGGTTTACTTCACTAAAACACCACAAAAAAGAGGGGACAGAGATAGAAGGGCTCgtgaggagaagaagaagaggtggaggaggagtgtCAAACTCCTTTTCAAGGTTGTGAGGTTATTCTCAGTTTGGTTGAAAGCTCAGTTTTAGTGGACAGGccctttttttaattctcttaAGCAACAGGGGCATGACGATATGATTTTTCTCTCTGGGATAGGtaacaacaaagaaaaagaagctTTCTGTCCAGTCTTCAGGTTAGAGCCTGTTGTCCAGCACCATTGAAATGTCAAAGAAgagctggagaaaaaaaagaaaaaaaaaagaagtcttttATATTCTGTATAATGAAATTCCTTTCAGGTCCAGCTCCAGCAGCATGAAGCTACCAGGTCTCGGCGGGGTTTAGCTGGGCGTTGGGGGTTCTCCACTGATTAAAAGTCCTTCAGTGGATGATACCACATGTTACATGTACAGAGAGTCGTGACAGGAAACAAGCCCGTTGAGCAGTGGAATTGCAGGTcttttcaattacattttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153258 lncRNA downstream 184826 11610597 ~ 11610879 (-) True G113700
TU153233 lncRNA downstream 255438 11534999 ~ 11540267 (-) True G113677
TU153220 lncRNA downstream 349434 11424184 ~ 11446271 (-) False G113667
TU153221 lncRNA downstream 349434 11445924 ~ 11446271 (-) True G113667
TU153204 lncRNA downstream 392475 11357734 ~ 11403230 (-) True G113653
TU153285 lncRNA upstream 82422 11958450 ~ 11958661 (-) True G113722
TU153295 lncRNA upstream 115716 11991744 ~ 12035749 (-) True G113729
TU153297 lncRNA upstream 144925 12020953 ~ 12059116 (-) True G113731
XR_005640757.1 lncRNA upstream 224714 12100742 ~ 12103252 (-) True LOC120568725
TU153319 lncRNA upstream 231325 12107353 ~ 12123096 (-) True G113748
XM_039815501.1 mRNA downstream 264900 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039815499.1 mRNA downstream 270868 11519469 ~ 11524837 (-) True selenop2
XM_039816321.1 mRNA downstream 293967 11500364 ~ 11501738 (-) True LOC120568667
XM_039815056.1 mRNA downstream 333093 11390884 ~ 11462612 (-) False zswim5
XM_039816569.1 mRNA upstream 233244 12109272 ~ 12113247 (-) False pigr
XM_039816568.1 mRNA upstream 233244 12109272 ~ 12113247 (-) True pigr
XM_039816570.1 mRNA upstream 240774 12116802 ~ 12122078 (-) True dad1
XM_039815524.1 mRNA upstream 255409 12131437 ~ 12152081 (-) True tgm1l1
XM_039816553.1 mRNA upstream 300829 12176857 ~ 12207670 (-) True rem2
unassigned_transcript_557 other downstream 906753 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 906858 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2285224 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2299953 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2392093 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 342034 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 725152 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 884887 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 1208533 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 2737585 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile