RNA id: TU153347


Basic Information

Item Value
RNA id TU153347
length 751
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G113772
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12163161 ~ 12175582 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAATCAGGAAATCAAGATGGACGGGCCTAATAAACAATAAATTTTCATACGACACTAGCTGGAAGCGATGCGGAGATATCGAAGAATATGTTAAGTGATTTATGGATTTATTGTACAAAGACACTGTAATTACAGGTTGGATGAAGAAACTTCTAAAAGACCCACGATGGCGTGGAAGACCTCGGTGAAACGGCGCATTTCTCTTCTAATGAAAAAAgATGTCACTGAACAGCTTCCGCTTCTTGGATTCGCCCGTCTGTATTTCCTGCCAGTGAGCTCTTCTGTGGATGAAGTGGGAGAGGGCAAATTTGGCCCACACATGGCGAGCAAACTGATCCGACCTCAGCTGGCTTTCAATCAGCACTGGAAGCTCTCGGCCAGTTGGACAATCACCCCCATGTGACCTGCAGCCAGGATGGCCTCCACGCCTTGGATCAGCTCATCAAACAACTTCAGGAactacagagaaagagagagcgaaaGAAAATGGGAGTAATCCTTGCAGTCACAAAATCCCGACTCTAATCCTGCACCGTGTGACGCAGACATTACGACCAACCAGTTTGGATTTGGCCGAGGCTGCGGTTAGCCTCTGTATGGGGAAGTTGGCGATGGAATGGAGGGCCAAGTCAACCAGCTGACCCTTGAGGTGGTTCTTGTAGAGGTCCCGGAGAAGGGACTTGTGGGATAGCTGTATGATCGTCTCAATGAGGTGGCTGGAGGCCTTGTCCTTGAGAAAGACCAGAAGT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03430 Mismatch repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153326 lncRNA downstream 35016 12126957 ~ 12128145 (-) True G113755
TU153319 lncRNA downstream 40065 12107353 ~ 12123096 (-) True G113748
XR_005640757.1 lncRNA downstream 59909 12100742 ~ 12103252 (-) True LOC120568725
TU153297 lncRNA downstream 104045 12020953 ~ 12059116 (-) True G113731
TU153295 lncRNA downstream 127412 11991744 ~ 12035749 (-) True G113729
TU153376 lncRNA upstream 32950 12208532 ~ 12208970 (-) True G113799
TU153383 lncRNA upstream 53397 12228979 ~ 12229338 (-) True G113806
TU153403 lncRNA upstream 178261 12353843 ~ 12356081 (-) True G113810
TU153431 lncRNA upstream 180752 12356334 ~ 12356696 (-) False G113828
TU153433 lncRNA upstream 180819 12356401 ~ 12356891 (-) True G113828
XM_039815524.1 mRNA downstream 11080 12131437 ~ 12152081 (-) True tgm1l1
XM_039816570.1 mRNA downstream 41083 12116802 ~ 12122078 (-) True dad1
XM_039816569.1 mRNA downstream 49914 12109272 ~ 12113247 (-) False pigr
XM_039816568.1 mRNA downstream 49914 12109272 ~ 12113247 (-) True pigr
XM_039815501.1 mRNA downstream 632356 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039816553.1 mRNA upstream 1275 12176857 ~ 12207670 (-) True rem2
XM_039815464.1 mRNA upstream 54539 12230121 ~ 12328040 (-) True carmil3
XM_039816603.1 mRNA upstream 185401 12360983 ~ 12514630 (-) True LOC120568866
XM_039816173.1 mRNA upstream 370779 12546361 ~ 12553571 (-) True psmb5
XM_039816175.1 mRNA upstream 377986 12553568 ~ 12554626 (-) True psmb11a
unassigned_transcript_557 other downstream 1274209 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 1274314 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2652680 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2667409 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2759549 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 42480 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 425598 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 585333 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 908979 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 2438031 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile