RNA id: TU153404


Basic Information

Item Value
RNA id TU153404
length 382
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G113811
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12356340 ~ 12356721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaaaaaagtttactaaaaagaaggttttgaacaactcaccgtagctcttgttgtttccggccacaggcattttatcagtcaaaaacaatcgatttccgaatgcaacataacagggaggagagtaaagacggaaagctcctaaagcttagttccatataaatgcacggataatttattgttttgtcgttagtgaaatacaatattgaccttgtataTGCCTCATATGGAGTCCcttcattcgcattcggatatcgactcgttttgactgctgAGGTGTtagcggccggaaacaacaagagctacggtgagttgttcaaaacctttctttttagtaaactctggttacacaaacaatgttgtcaataccttcgttaaggtgt

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153359 lncRNA upstream 134656 12221376 ~ 12221684 (+) True G113782
TU153354 lncRNA upstream 146900 12208714 ~ 12209440 (+) True G113778
TU153353 lncRNA upstream 148022 12208104 ~ 12208318 (+) True G113777
TU153352 lncRNA upstream 148314 12207726 ~ 12208026 (+) True G113776
TU153349 lncRNA upstream 156121 12177859 ~ 12200219 (+) False G113773
TU153452 lncRNA downstream 244462 12601183 ~ 12602922 (+) True G113843
TU153466 lncRNA downstream 269358 12626079 ~ 12627519 (+) True G113852
TU153668 lncRNA downstream 421619 12778340 ~ 12779398 (+) False G113938
TU153670 lncRNA downstream 421619 12778340 ~ 12779398 (+) False G113938
TU153671 lncRNA downstream 421619 12778340 ~ 12779398 (+) False G113938
XM_039815525.1 mRNA upstream 190063 12157449 ~ 12166277 (+) True LOC120568189
XM_039816172.1 mRNA upstream 228318 12122674 ~ 12128022 (+) True abhd4
XM_039814521.1 mRNA upstream 266779 12074976 ~ 12089561 (+) False lrrc24
XM_039816724.1 mRNA downstream 198965 12555686 ~ 12562978 (+) True prmt5
XM_039815222.1 mRNA downstream 209273 12565994 ~ 12581212 (+) True slc7a8b
XM_039815227.1 mRNA downstream 226073 12582794 ~ 12599840 (+) True ap1g2
XM_039815223.1 mRNA downstream 248673 12605394 ~ 12608144 (+) True zp3f.2
XM_039815224.1 mRNA downstream 252436 12609157 ~ 12611158 (+) True LOC120568040
TU153339 other upstream 196085 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 196085 12157516 ~ 12160255 (+) False LOC120568189
TU153118 other upstream 1012649 11332597 ~ 11343691 (+) False pkia
unassigned_transcript_556 other upstream 1469862 10885600 ~ 10886478 (+) True LOC120568835
TU153003 other upstream 1470158 10885595 ~ 10886182 (+) False LOC120568835
TU153451 other downstream 225921 12582642 ~ 12587163 (+) False ap1g2
TU153727 other downstream 572494 12929215 ~ 12975637 (+) True G113979
TU153737 other downstream 595859 12952580 ~ 12957356 (+) False LOC120569010
TU153768 other downstream 757928 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 766334 13123055 ~ 13125463 (+) False ndufb3

Expression Profile