RNA id: TU153687


Basic Information

Item Value
RNA id TU153687
length 1875
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G113945
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12789839 ~ 12793027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGTTACAGGAAATAAATGGAGACATTGATATTATGCCCGTCTGTCACAAGATTTTAAGTATAGAGAGGACAAGAACATTTTAATACTATGTTGCCCTCCTTCAACAGTGTTTATTCCACCATCACAGATGAGgtcttgtgtttgtctgtatttggTCTGCTGTAATAAAGTAAGCAACCTCTTTTCACGGCATCGAGTGTGTCACTGGTGTATTGTGTCAGTACGGATTACCAGGTAAAAAGTCTTTGCACATGTTTTGTCATGCATTATTTGTTTCAGATTCCACATTTAGAAAATGCACAGTATTTTCATCAGTAACAGAGAGTGAAAACAGTAAAGTTAAAGCAAACTGATGACTATGGAAAACATACTGACCTTGCAGCTGCTAGAGTGTCTGCCACACATGCATCATTGTTCTGGGTGACACGGACTGCCTGCTCAACCTTTTCCAGCATGTCAGATTTTCCTGCATAAAAAGCCACTATAGGAGCCAGTTTGGCTATTCCATCAATCTGACAGTCGCTCTCACAGCCTGTGGAAAATTACagtagtaatagtatagtaataGTTAGAGCGGTTTCTCTTAGTTATGTCTTAGTTATTGTAATGCCATTACTGCAGATTTACCAGTCTCCTCTTTGCCTGCATCCACATTCTTCAGGAAGCTCTTTAAACTCGCATGTCTCCATGGTCCCTCGATGGGCAGCTGAGGTTTTGGCCCTGGtatacacaacaaacacaacatcaTCAGTATTCCCACCTTACTAAGTGAAAAGAGTTGAATTCATTCTTCTGCAACTACATAAAAGACTTGTCAACTTCTACTGGATAGCTGTCctacctcctctctctctgtaagGATCATTGACAGGCGTGTCATACTCTGATCCAGGCCCAAAGAATTTTAGTGTGCGCTGCTTCAGATCGTCAACATTCTACCTCCACATTCGGACAAGGACTCCAGCAGGACAAAGGCCTGGTCTCCGTAGCAGCTCTGCTGGCCCGTCTGCCTCCTGTAGAAAGGGTTGGCCGACTCAGGGCGGAACTCAGGGTTCGGATCCTGAGCCAGAATCCCCTGCAGCTTCTGCCGATCGTACACCCAGTGGAGGGGCTGCTGCTGCATCTGCAACTGCTGATCCTACAATGGCTCCTATCGCTCTGTTAGACAGAGCTGCAGCCATCTgtaaaaaacattcaaagtaaTATTGGAATTTAGGAAATGGTTATTATTTGTTGATAAAATTGAACGAttgttatttgttattgtaATTAGAGCTGAAACTGTAATGACTGGCAGTTTTGAGTTTATCTGCATTGTACTACCTTTCCTAGATTATCTGAGATGATGTGTAGCCTACAGCTTGAATAATTGATATTAGCTCGGTGTGAGGTAGCTATATTTCAGCAGTAACTAATGTTACCGCTAGTGCTTCATGACTTGAACGCAGCATTGTTTTATCTCGCTAATATTTTTTacgacaacaatggagctccgGCCAGAGGAAATGAAACATGCGCTGATAGATTCGTCTGGTTTCCAGTATAATGACCTAGCTAGACTAAGTAACGTCAGAGGAGATAGCAGTAACGTATTTATAAACAATGTAACGTTAGCGTCACTTAACgatagctaacgtcagctaacgtcAGTCATTAACGTTAGACATAAAGTCTTACCTTAAACTCCGtttaatgtaacgttaacgttatgtACCAACTGACACCCAGGTCACACTGCAGTTTGTTTCAACCCTCGGCAACTCCTGAAGGAAACAATTTACATTTCAATCATCCGTAAAATGAATACAATCTGTGAGGTGTGTTGTTCCTACATGTTATGCATGTTATGAAAGGTTGTTACTTTTAGCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153660 lncRNA downstream 30566 12757651 ~ 12759273 (-) True G113933
TU153583 lncRNA downstream 181270 12601180 ~ 12608569 (-) False nedd8l
TU153585 lncRNA downstream 181270 12601180 ~ 12608569 (-) True nedd8l
XR_005640653.1 lncRNA downstream 189247 12585529 ~ 12600592 (-) True LOC120568043
TU153433 lncRNA downstream 432948 12356401 ~ 12356891 (-) True G113828
TU153942 lncRNA upstream 160353 12953380 ~ 13074570 (-) False G114129
TU153955 lncRNA upstream 173449 12966476 ~ 12968354 (-) False LOC120568578
XR_005640636.1 lncRNA upstream 230243 13023270 ~ 13039958 (-) True LOC120567923
XR_005640635.1 lncRNA upstream 230243 13023270 ~ 13038939 (-) False LOC120567923
TU153937 lncRNA upstream 279218 13072245 ~ 13167706 (-) True G114129
XM_039814533.1 mRNA downstream 3161 12778340 ~ 12786678 (-) True casq1a
XM_039816944.1 mRNA downstream 15076 12769369 ~ 12774763 (-) True si:rp71-1g18.1
XM_039816687.1 mRNA downstream 21214 12760748 ~ 12768625 (-) False LOC120568934
XM_039816686.1 mRNA downstream 21214 12760748 ~ 12768625 (-) True LOC120568934
XM_039816688.1 mRNA downstream 22282 12760748 ~ 12767557 (-) False LOC120568934
XM_039816412.1 mRNA upstream 8879 12801906 ~ 12803940 (-) True LOC120568729
XM_039814584.1 mRNA upstream 46556 12839583 ~ 12844436 (-) True LOC120567650
XM_039816882.1 mRNA upstream 53101 12846128 ~ 12854319 (-) False hhatla
XM_039816881.1 mRNA upstream 53101 12846128 ~ 12854319 (-) True hhatla
XM_039816884.1 mRNA upstream 53101 12846128 ~ 12850739 (-) False hhatla
XR_005640810.1 other downstream 21214 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 186930 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 571572 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 1900887 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 1900992 10887007 ~ 10888847 (-) False LOC120567758
TU153973 other upstream 291534 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 1820586 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 2002891 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 2497159 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 2497159 15290186 ~ 15304610 (-) False mfsd8l2

Expression Profile