RNA id: TU153727


Basic Information

Item Value
RNA id TU153727
length 7659
RNA type TUCP
GC content 0.42
exon number 2
gene id G113979
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12929215 ~ 12975637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACAAATCATACAGTATCAACTGTATGCTTAGCTTTAATACAAGAACTTAACACTTTATCATGTGGTTACAGTATAAAATCAACATTTTCATGATTTCATAAGATCAATTTCACGACTAACAAAACCTTTTCATAAAAACATGTTATAAATACACAAATGGAATAACTGCTTTCCTAATATTAAAGAAGTGGGGAAACGCACTGCTTGTCTTGTTTAGTGCTATTCCTTTGGTTGGCTAAATGTTACAAACACCGTCCCTTCCTTGTTGGTGTTGCTCAACACTTTATCTTCAAAAGTGCGACCAGATCTTCGAATTAATGGGGATGTCATGACTTCGTATCTGGCTGGACTCCCGACTACTTCAAACAGTGCTGATGATTTACTGTCAGACTGTTTGGTGACAACTGTTGAAGTCACAGAAGAAACAAATACATTGCCAAAGCCATCGGTCTCTTCGTATGTTTCACTGACAGTCTTTGTGCCAACTATTCCTGCTGGCTGCTCTGGAACAGTTTTCACTTCGAGCACGCTGACCTTGCGTTGTGCAGGACTGAGACCATTCTTTGAgggttcagcagcagcagcagcagcagcagcagcagactccTGTCCCGAATCACTTTTTGCATCATGGCAACTTTGAGAATTCCCCTCTGTTTTTGGTTTAAATGTTGACATGGGTGACTTTGGTTGTTCGGCAGGCTTTCTAGCAGCTGAGTGAATGGAGATAAATGACGGGGAAGACTGGGAAGAGGACTGTCTAATGATTGGCTTGTTGGGGACTTGTCTGCGCACTTCCTGTTTAGAAGGACTTGAATCTAAAACTGTTTGCATATTCACATCAGACACCTCTTTGATTTGACCTGACTTGGCCTTGCTGGACACAATACTTATTTTCCTGATGTTGTTGGTGGGTTGAAGGTTTTGCTCAGATTTCAAAGATTCATCAAATAGTCCTGACAACCCTGCAATGTCAGCCTCAGATTTCAGATTGGAGACGGAGTACAGAGCCTTTTTAATTGCCTCTTCAATGTCAAGAAGTTTTGCCAACGTTTGTTCCTTCAGATTCATTATTTCCTTGCTTGCCTTTTCCAGATCTTCAAATGCAGTCTCAACTGAGGAAACGCTTTCTAGATCATCGTCCTGTGTCTCTACCTCAACTTTCTTTTCCTCCGTTTTACTTTGCTTTGCATTTCCACTTGGTGTAACCATCCAAGCAGGGACAGTCTCGTATAACGTCTTAAAGGAGCTAACGTCTGCACTGCTggtctctccctctatctcttGCACTTGAGAAAGGATTCCTTTAAGTTCCTCTCGTTTCTTTAAATTTTCAAAAATTTCCATGGCCGCTTTCACGTTTCCCTTCATGATCTCCTCCTTGTGGACAGAAAGCCTCTGTCGTCTTTCATCATCTGTCTCCTTTACTTTCTTCTCTCTTAAAACAACTTTATCCTGGAGTTTGGGTTGCTTTTCATTGAGGTCATTTTGCTGTGTCTTGGTCTTTGATGTTTGCTGTGCGTCATTAGTGTTGTCTTCTTCCTTGGGAGGTGATTTGTGTTGTTGGGCAGTGGTTTTCTTGGTTTGTTTATGGTCACTACCATTatcatttatcacttttaccTTCTTAGACAACAAAGGGTCTCTTTTGTCTAGAGTCTCACTTTCCATTCTTTCAAAGTTCTGTAGAGCAGCCTGCAAGCTCAGGCTCATTTCACGTTTACCATCTTCTGCATAATTCTGCATGCACATTTGTATCTCCTCAGCCGCATTGATTTTCTGTATTACATTTCTCTCCATTTCAACTTCAGTGCTGTTCAACATCATTACTGGGCAGTTTGATTTGCTCTCtgtaagtgttttatttttctccttAGTTTCCTGAGCCTTTAAGTGCGATGGTAGACGTTCACTTGTTTGATTTGAGTCTTGGGATGTTTCAATACAGTTTTGGTGGGATGTTTCATGTAAGGTCTCTTTACTGATTATGTCATGTGTTGTGGTCTCTTGTTGTTTATCTGGAGAGGGCCTAGGAAACGGTTGGCTTTGTTTTGGGGGAATCACTGTGCTTTTTATGTTGTCTTTAATGGTGCAAGCGACTTCAGGTGTAGCtaaaatattctgtttttttacGACTACTGATTTCGTCCATTTTGGCTTTGGTGGTAAAGCTGGCTTCTGCTCCTTTGGTTTCTCGCTTGTCTTTTGGGGAAGTGGAGGTGGAGTTACACTCACAGAGCTGGATGATTTAGAGTTTCCATTTGCTACAGGGTTGGGTGTTGTAATGGATGGTTGTCCTTCACACGTTACTGAAATTGAAGGAGACAATTTTGTGTCAGATGGAGGCATAGACACCACAACACACTGCTTGTGAACAGTCTTGCTCCTCCCTGAACAAGCCTTCCCTGAATTCCTGTATATCATTGCAGCTTTATAGTCTCCTTTGGATACATTCACGCTAGACTTCTCAAGAGACTGCAAAGCCAATTGGACATTACCTCTTACAATATCTTCTTTATCTAGGAGCTTCTGCTCTGTTGATGAACTCTGTAGAGACTTAATAGCTGCCCTCACATCTCCTCTGGTAACTTCTTCTGTCTCATCTTCAGTTGTCTGACCATTACACTCACAACTTACAAAAGGTGGCAGTGATTCTGGTGCACAATTACTGACTATAACTGTACTTTGTTGACAAGCCTCAAAGGAAACATGGCTTTCCTTATCTTTATCTGCATCACTGACCTTTGGATAAGTCTTGATTTGCTGGCATCTGGAGGAAGACGAACATGTAGATTGCATCACTGTGGAGGAGCTTTCCTCTTGTGCTGTGACATTCAGGTTGTATATTTTCCCAGGGACAATGACTTCGCGTTCCACTTGCAGGCTTTGCTGCTTAGCCATTTCAAGGGACTTTTTAGCCGCTTTCACATCTCCGGATATAATGACCTCTTTTTGTGCTTGACTTCCTTCTATTTCAGGACCTGACAAGTTCATGTCATAGATAGTTCCAGGTGTAATGATCTCCCGCTCCACACACATGCTCTGTTGCTTTGCGCGTTCTAATGACTGTAGTGTTGCCTTGATGTCCCCTGCCACTATTTCCTCTTTTTCCACCATGACAGGTTGCTTTACTGCAAGTTGTTGCTTTGCTGATAAGATATCCCCAGGGATTATTTCTTCCTTTGGAGCGCAGTTTTCAACACCGAGAGAATACTCAGACGAAAAAACTTTTTTGGTGTTCTTTACATCCCCTGGTAAAACATCAGAAATGGTTCGCTCTACCTGCTCTTTTTGCTGACAGAGACTTCTCTTTGCTTCCTTCACATCGCCCTGAACTATTTCAATGTGCTCCTCAGCCAGAAGGCGGTGATCAACTTCATCTCCTGTTGCCTCAGTATGAAGACTTTTTAGATAGTGCAGGTCTCCTTTCTCAATGCAACTTTTATAGAGATTCACATTTCccttttcattttcatccaCTCTACATGACGCTGCAGTCCTCTGACTATTGGCAGTAGCTAACAGATTTCCAATCGTAGACTTTATGTCTCCCTTCTCTATAATGTGACTCTCGGTTTTGGTTTCAGAATTGCAGATGAGTGAATAAACTGACATCTCTGCTTGCCCCCCTGCAGTCTCTTGCATTATTATTCCTTTTTTCAAATCATTATCTTGGACAAGCAATTCATCGATCATCTGGGCAATGTTTTGCATTCTTTGATCCCTCTCGAGGTTGACAGTTGTGGCTGACTGGTAGACTGGAAGTTCTACTACTGTGGTATTCACGTTACCCTTCTCCACTTCTCTAAGTAGACTAACTTGGGGCTTTAGGGTTGGTTTGAGTAAGAGTTGTAACATGATGTTCCTGATGTTTCCCCCAACAACCTCTTCATTCTGGATTTGCACACCATTGCTTTCAAGCAGATATTTTGCCATGTTAACATTTCTACTCTCATTTGCTTCTATTATGATGCCGCTTGAGTGAACAAAAGTCATATGGTAAAGATAGGACAGGGTGTCAGCTACACTGTTGGCAGCAATTTTGTCCAGCGGAGTGGTTTCAAAGAGCCAGGTAGTGCACTTCACATCAGATTTAGGTATTTCCTCCTCAGCAACTTGCACTGAGGTATCCTCAGGCTCCTTGATCTTGTCCAGGGGCTGTGATTCAAAAAGCCAAGTGCAGCGTTTCACATCTCCTTTCTGGCTGTCTTCTCTATGGACCGTTTTTACAAGACCTTGTTCCTGAGGTTCCCCTTTCAGACTGTCAATAGTTTGATTCTCAAAGAGCCAGGTAGAGGTCCTGACATCACCATGCTGGACATCAGTGACACTAACCATTCGCATGAACTTCTGGGATGATTGATCAGATTCAAATATCTGTTTATTGAGTTGCACATTAGTGCTTCCCAAGTCTTCAAGGATCCTGACAGAGGTCTCATCTCGGCTGGTAAGGGAGTCCAAAGGTTGTGTCTCAAACTTCCATCTGGCTGATTTGACATCTCCTTTCTTGACATCTTCTTGGGTAACAGCTCGGATCAAGTAAACTTCATTCTCTGCCTTAATGGCGTCAAGGGGTTTTGTCTCAAACATCCACCTTGCTCCTCTTACATCGCCAGTCATTACCTCCTCTTTTTTCACAGTTGTAACTTCATGAAACTGGCCTTCTTTGTCTCTGATGGCATACAGCGGCAGGGACTCAAACATCATGGTGCTCGATTTGACGTCAACATTGCTCACAGGCTGTTCCACAGAGTCTGACCTCTGTTCAAGGGGTTGGTTGTGGATTTTGTCCAGTGTGGAGGTTTcaaatataaactttttgttgtGTACATCACCACTCTCTGCACCACTGACTCTTTGAATGTTTGCATCCTCATTGTCCTTATTGATCTGGTTCATGGGACAGTTTTCAAACATCCAAGTAAATTTGTGTACGGAACCTTTTTCGAGGTGTTTGTCTTGGTTCTGTTCATCAGATGTCACCATTTCTGATCCTATTGCATCAAGGGACTGGGATTCAAAAAGTTCTTTGACTCGTGAGACATCTCCAGACTGAAAGTTGACCTGGCTGACACATCTCACATCGTGTTCAGAATTTGCCTCCTTTCTTATTCTATCCAAGGTTTCTGTTTCAAAAACATGTCTGACTGTCTGAACACCAACCTCCGATTTGGCAGAATCCTGAATGGTGTTGCATAGCTTCAAATTGTACTCTTCGCCATCTTTGATGCTGTCTAGAGGCTGCGATTCAAAAAGCCAAGTAATGGACTTGACATTGGTATTGTCAATGGCTTCTTTATCATTTACTTTTTCTGATTTGTCATACAAAATATCCATTGGTTGTGTCTCAAATAACCATTTACAGTTCTTGACATCACCTTTACGATGCTCCTCTTCAACAGAAGCATCCTGCTCTGTTTGGTTGAACTTGGAATGTATCCCATCTATTGTCTGGGTTTCAAAAAGCCATTTTGCCATCTTGACATCGCCCATCGTATCCTCCTGTCTGGTGATGCCTTTGATTAcctcaacattttcttttccctctgcAAGTTTGTCTAAAGGCTTGGTCTCAAACATCCACTTATAGTTTTGGACCTTCCCCTTGATGAATTCTTCCCGGCTGACAGTTGTAACCGTATGGAGGTTTCCAGAGCTGTCCTTTATTGCATATAAAGGAGTTGTCTCAAACATTGCTTTGTTACCTTTTACATTTCCTGCTGCAATAGAGTTTTCCTCCTCAATAATCTCTTCATCAGAATGAGCAATTTTGCTCAGCGGAATTGTTTCAAAAAGATGTTTGAATCCCTTAACATCACCCTTTTCAATCGCTTGTTCCTTGAATGAGGTGTTCTTTTGAATACTGCAGCTctcaaatatttgttttttgccTTTTACTTCTCCTTGTTCCTCAGCTGAAAGGGTAACTTTCTTCAAACGCCCAACTTCATAGCTATCACTAAGGGTCTCCATGTGTTGGGTTTCAAACAGCCACAGAGAAGTCTTGACATCTCCTGCAATAATGTCTTCCTTTTCCAAAGGCTTTTCTGCAGAGTCTCCTTTTAGTGTTGCCAAGGGCTGCATCTCAAAGAGCTTCCTCTTGTTCACGACATCGGCCTCTTCTGCACATTCAACCACCATTCCTTCAAACTTGTCCACACCCACGACCTCTTGTATTGTGTCAAATGACTGAGTTTCAAACATCCACCTCTTCTGGTCAACTCCTCCTCTGTGCCCCTCTTCCAGAGATATACCCCGAATTATTTTCACACCATCAGTTCCCTTATTATTCAGGTCCAAAGGCTGGGTTTCAAAAAGCCAACGGGCAGTACTGATGTTGCTGCTATTGATCTCCTCCCTGCAGATGGATTTAATCTCATGTATATTGCCACTGTTGTCACTGATAGCACAGCAAGGTTGTGTCTGGAATAGTTTTACAGTCTTCTGAACGTCTCCTTTCTGCTCTTGAAGCTCAGATCTCAGTTTGAGGAAACTATGTCCTTCTATGGAGTTGCAGCGTCCCAAGTCACTCAATGGTTTAGACTCAAAAAGCAGCCGAGCCCCTGTCACATTTCCTGGCTGGATGGGTTCTTTCAGCACTGCTTCAACCAATTCACCCTCTTCTCTCTTTGATTTATTTAGAGAATCTAAGGGCTGGGTCTCAAACAGCCATGTTGATGTTCTCACATCCCCTTTGACAGAAGTCTGTCTTTTAGCAGACATTTGTTGGGCGCTGTCAAAGTGCTCAAACATAGAGGAGGTGCCTCTGACGTTTCCACCTTTTAACTCCTCATCATCCAGCAGCTTCTTAGTTGCATGAGGATCCCCAATATTGTCCAGAGTCCAATTCTCAAAGATCCACCTCATAGACTGCACTTCACACTGATAAGCTGCATCCGCTGCCTGAGAGTTTTCTGACTGTACTGCCTTAAATATCTCATCGTCCACGGCGTCATCGAGACTTGCCCTTAGGTCTGGGTGGATGTGTTTAAAGAGCCTCTTTAGCTCACTTTTCTGCCGTTGCTGGTACAGCGTGGAAAAGGTTTCTTTCGATGGAGGCAGGGGGAGGCTACTTAATGCTGAAGGCCCTTCATAGTCAAGGGGTCTAGGTGGtacaggaggaggtggggggagAGGCAGGTCGTCTTCATCATGAGATGATTGTGAAACTGTGATTTTCCTGGCTGCTTCAGCCATCTTTAAATAAAAGACAGACGGGATTAAAATGGTCAGATTTCAGTAGTATAAAACAATATTAGTTATGGCGTGCAAATATTAGAATGGCATGCATTTTAGCAAGTTAAGCATATTTACCTTTGTCTATGCTCGCTTGACGTTTTTCACAGCAAACCATCCTCTGTCACACCAGGGTTAACAAAACACTTCATAGCTATTAGTAAGCAGacatcacacagacacctaATCTACTGTATACTCTAAGTGCACTAAGTTACATCAATAACTAAATGTCTGCCTTTGTAAATATAAATCTGCATTATACCAGCATTACCTGATATTATTTTGGCCACTAAATGCATCACTTTGTTCACTAGCTGGTTGCTAATTGTGTCTATTTAGCGCTGGGCAGGTAAACAGGTTATTAGATCTTTTTTGCTAGAATCTTCTGCCTGCTGCAGCTGAAAACACTCAGACACac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153732 lncRNA upstream 14994 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 22103 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 54905 12861625 ~ 12874310 (+) True G113956
TU153668 lncRNA upstream 149817 12778340 ~ 12779398 (+) False G113938
TU153670 lncRNA upstream 149817 12778340 ~ 12779398 (+) False G113938
TU153756 lncRNA downstream 34938 13010575 ~ 13074594 (+) False col6a1
TU153760 lncRNA downstream 51442 13027079 ~ 13028170 (+) True G114000
TU153769 lncRNA downstream 176462 13152099 ~ 13153594 (+) True G114008
TU153788 lncRNA downstream 207702 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 220624 13196261 ~ 13198734 (+) True G114033
XM_039814769.1 mRNA upstream 10017 12911439 ~ 12919198 (+) True LOC120567760
XM_039815465.1 mRNA upstream 21972 12901539 ~ 12907243 (+) True LOC120568152
XM_039815466.1 mRNA upstream 21973 12902528 ~ 12907242 (+) False LOC120568152
XM_039815467.1 mRNA upstream 27790 12888543 ~ 12901425 (+) True oxsr1a
XM_039816347.1 mRNA upstream 60073 12855102 ~ 12869142 (+) True ctdsplb
XM_039815014.1 mRNA downstream 3456 12979093 ~ 13025931 (+) True LOC120567919
XM_039815017.1 mRNA downstream 3456 12979093 ~ 13025931 (+) False LOC120567919
XM_039815016.1 mRNA downstream 3456 12979093 ~ 13025931 (+) False LOC120567919
XM_039815018.1 mRNA downstream 3456 12979093 ~ 13025931 (+) False LOC120567919
XM_039815015.1 mRNA downstream 3456 12979093 ~ 13025931 (+) False LOC120567919
TU153451 other upstream 342052 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 768960 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 768960 12157516 ~ 12160255 (+) False LOC120568189
TU153118 other upstream 1585524 11332597 ~ 11343691 (+) False pkia
unassigned_transcript_556 other upstream 2042737 10885600 ~ 10886478 (+) True LOC120568835
TU153768 other downstream 139012 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 147418 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 242502 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1311513 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1312718 14288355 ~ 14290960 (+) False LOC120568245

Expression Profile