RNA id: TU153769


Basic Information

Item Value
RNA id TU153769
length 1322
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G114008
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13152099 ~ 13153594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttcttttgtttgtcaaTTTATTTTCATCACTCAAACTTCAATTTGatatgtttcttctttttcacaaaaataatGAACTGTCCTTACCAGAAGGTGTACAAGCATTGACAAAAGAGcgaaaaataaaagatataacAAAAACAACTTCAACTCACAAACACGTAACTGCTCTGAGCGGTAGCGGATTCATGTATTGTGTATTTCATGCCGTACTGCTTGTTATTATGACAGCATATAATTAATGTCAGTACATGTTCTCTGTTTACTCCCTTTATCGTAGTAATCACATTCACATTGGGATATTCTAAACTCCCAACAATAAATGAATGGCatgtcagtgagtgtgtgtactaTGGACTGCATTTGTTGACCAATCATCATCTTTCCTGTTCTTACCAGACAACCTGTGGAGATATCACTTACATCCATAGAACCAGTACCTAAAGGTTCATTCATTTATCATCACTGAGGTCACACGTTTGTTATTCATTAAACCAACACCGCTTTAATAAACAGTCCTAGAGTCCTGAAGTATCTTAATATGACACCTATCCCTTATCAAGCTTGTTTCTCTAGATTTCTGATTCagtatgttaaaacatgtaaagGCATTGGGTGGCGGGTGTGGATTAGCAACCAACAGTTGTTTTCTGGTAATTTGATTACGTAAAAAAATTTCTTTGGAAATGTGCACAAGAAACCCGAAGGTTAGTCCTGCTTCCTCTTCCTGCTCAGTTTCCAGAAGCATAGTTTCAAGCATTTTACTATCAGTATTACAAAAAACAGCACTAGAGTAGCCAGTACTGCTATTACATCCAGGCAGTAGTACTGGAGCCAGTTGAGGTCAAGGACAGCAGGTCTGAGATGTTTTGCCCCTTTGTGCCGCATCACAAATTCTGTCCAGTACACTGAAAGGTCCAGTGGGTCAACTGGCCGGTCTTTATGGAGAGCTGACAGCTTCTGCATGTTCTCTTTCACCTGGTGTCATTGATGACCTCATTCAGTCCCTGAAGAAGGCTCTCTGTAGTGATCGAATAAATATCCAACACGACTCCAGCTCCTCTGCTTGCAAACCTCACTGCGTTGTCAGCTTGGTCCCCTGCAACTGGCATCATCACCATGGGAACAGCGTGACACAGTCCCTCAAAGAGACCATGAGAGCCAGCATGAGTGATGAAAGCCCGAGCTCCAGGATGTgctaacacacaacacacaaagatTTCAGATGTTACGGTATGGGACGCATCATCGCTCAGTATTGAGTTGTGTGCTTCACATTTTAGGATGTTTTGCAGTGGAGTTACAGACCTAGTAGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153756 lncRNA upstream 77505 13010575 ~ 13074594 (+) False col6a1
TU153760 lncRNA upstream 123929 13027079 ~ 13028170 (+) True G114000
TU153732 lncRNA upstream 237878 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 244987 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 277789 12861625 ~ 12874310 (+) True G113956
TU153788 lncRNA downstream 29745 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 42667 13196261 ~ 13198734 (+) True G114033
TU153802 lncRNA downstream 46174 13199768 ~ 13200746 (+) True G114035
TU153804 lncRNA downstream 51231 13204825 ~ 13207023 (+) True G114037
XR_005640785.1 lncRNA downstream 97157 13250751 ~ 13254585 (+) True LOC120568783
XM_039815662.1 mRNA upstream 26636 13123030 ~ 13125463 (+) True ndufb3
XM_039815659.1 mRNA upstream 29426 13118569 ~ 13122673 (+) True pecr
XM_039815661.1 mRNA upstream 34748 13114596 ~ 13117351 (+) True rpl37a
XM_039815655.1 mRNA upstream 39835 13106699 ~ 13112264 (+) True orc2
XM_039815656.1 mRNA upstream 39835 13106699 ~ 13112264 (+) False orc2
XM_039817023.1 mRNA downstream 5422 13159016 ~ 13163518 (+) True si:ch211-227n13.3
XM_039817024.1 mRNA downstream 10245 13163839 ~ 13166831 (+) True LOC120569132
XM_039816866.1 mRNA downstream 23231 13176825 ~ 13183207 (+) True mcm6
XM_039816320.1 mRNA downstream 29690 13183284 ~ 13186364 (+) True si:ch73-71c20.5
XM_039816336.1 mRNA downstream 59722 13213316 ~ 13223854 (+) False LOC120568679
TU153770 other upstream 26636 13123055 ~ 13125463 (+) False ndufb3
TU153768 other upstream 34743 13114649 ~ 13117356 (+) False rpl37a
TU153727 other upstream 176462 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 194743 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 564936 12582642 ~ 12587163 (+) False ap1g2
unassigned_transcript_558 other downstream 64545 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1133556 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1134761 14288355 ~ 14290960 (+) False LOC120568245
TU154338 other downstream 1135943 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other downstream 1139166 14292760 ~ 14295268 (+) False LOC120568245

Expression Profile