RNA id: TU153838


Basic Information

Item Value
RNA id TU153838
length 1752
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G114063
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13354254 ~ 13356050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcaaatataCAGGCTGACAGCAGCCTTGTACACCAACATCAAAAGTACACTTTGGCAGCAATGGCACCTCACACACGACAGCCTATCCATTCTTTACAAAAAAGCTCACAGATAGGCGTGCAAATACATCATATGAAAATAGTTAACTGTGGAACATGTGCAGTTGTTTCAGTGCCTTCAAGCAATAAACATCGTCAAATGATGCACTTTGGATACCCTAATCTTTCTCAATGGTCTAACCTAAAGCGGTGAGGGAAATCGTATGCAGGCTTCAGCAACATATGATAACACGAACGTATGGAGTTGTCTGCAGTTGCTGGCATAAGGGACCACTAGGCTCGCCACATATTCTCATGTGTAGGCAGACTGTTTATATGACAATTATGTATTACAGTACACTGTGatgtatctcacacacacacacacacacacacacacacaccacattttatgtcCTAACAGTCTGCTGCcgattgtgtgtatgtatgcatgtgtgtctgtaaaaaggACGCTGACGCACCCAACTTCCCACTGTAAGCCAAATCTACCTTTGGGTATAAATAAAGTTACCTTGACTGCCAGCTGTTGTCCCACATTCTTGGACCTACTGCAGACTACCTGTATCACAAACTAAGGCACTCAATTTGGGGACCACTTTTAAGTGTAGAAGATTGAAACCCCTTGTGATATTAGAGCCATTTTAAGCAGTTTCtggctgaaagaaaaaaaaaaaaaaagggtcataAACAAGAGTCTTGGACGGTTATTCTTTCCAATTTACAGACCCATAAATTAGGTGACATGAACCTAAGGGGTCATTATCAGATTTAAATGACCAGTTAAGCTTCACATAGCGTGTGGATGAGCTAAAATAAGTGTCTTCCATACTTGCCACAGGCTTTAGGAGACATGTAGCCCAAACAGGAATTAGGCAAATTCTCACGCCACCCCTCatacaagggtctacatcaaccCCCTTTCCCACGTTCAGTGGCTCCATCGCCATCCAGCCAGTCGCGATTTTGGTCCTCTTAGCTCGTCTCGGAGCGTGAGCACATACTCGTCTCTTCTTCCCCAGCTTGTTCTCCGAGTCACACATTGATCTTCTTCAGCTGTTCATATGTGAGGAAGAACTGGATACAGAGTAAAGGAACATATAGGcaagaaaagtggatttttttttcttctgttgagCATGGGTGGCTCACAGGAATTGTGGCTCTTTCTGTACTGCAGCTCAAAGCCTTGTTACCATTTCCTGTTACCCCAGACTACTCAGCTGTAACAAGTCAATAATCTCATTACATTTTTCAGGCATGGTTGGACACACGATGACGACCTGACAGCACTTCTCTTCCCCCTGTAACCGTTTGGTCTGGAAAGACTTTCACAGAGTTCACTCTCCactccttcctttttttctcctcacctttccctctttccctcccagGTCCTCTCTAACCAGGGGCAGTGGGGTACAGAGGCAGTATTTTCACAAAGTTACATAAGAGTGTTCGCTAGCATTAAGCTAATCTTTTCTAACTGAATGCATAACAGAATTTTCCAAGTTGTTCCCCTTGCTAATTTCTCCAGCTCAATTAATATTGCATCACAGAGGATATATGTAAACAGAGTGGTGCACTAAAAAGATGGTTAAAGGATACAATGATGTTCCATGGTCCCAGGCGGAGCCAGTTGGGAAAGAAACCCTTGTACAGGGCCATGAAGCCCTCTGAGCGCCACgtctgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153797 lncRNA upstream 65251 13288193 ~ 13289003 (+) True G114032
TU153826 lncRNA upstream 67035 13286650 ~ 13287219 (+) True G114055
XR_005640785.1 lncRNA upstream 99669 13250751 ~ 13254585 (+) True LOC120568783
TU153804 lncRNA upstream 147231 13204825 ~ 13207023 (+) True G114037
TU153802 lncRNA upstream 153508 13199768 ~ 13200746 (+) True G114035
TU153872 lncRNA downstream 113461 13469511 ~ 13472357 (+) True G114094
TU153873 lncRNA downstream 116964 13473014 ~ 13473251 (+) True G114095
TU154143 lncRNA downstream 302992 13659042 ~ 13659381 (+) True G114271
TU154180 lncRNA downstream 376632 13732682 ~ 13732963 (+) True G114301
XR_005640643.1 lncRNA downstream 387225 13743275 ~ 13840945 (+) True LOC120567951
XM_039816353.1 mRNA upstream 68076 13279076 ~ 13286178 (+) True LOC120568688
XM_039816486.1 mRNA upstream 75825 13274162 ~ 13278429 (+) True LOC120568782
XM_039816336.1 mRNA upstream 130400 13213316 ~ 13223854 (+) False LOC120568679
XM_039814776.1 mRNA downstream 33171 13389221 ~ 13392603 (+) True LOC120567765
XM_039814775.1 mRNA downstream 33178 13389228 ~ 13392603 (+) False LOC120567765
XM_039816255.1 mRNA downstream 38438 13394488 ~ 13410455 (+) True LOC120568628
XM_039816256.1 mRNA downstream 38441 13394491 ~ 13410455 (+) False LOC120568628
XM_039816492.1 mRNA downstream 55903 13411953 ~ 13420965 (+) True LOC120568788
unassigned_transcript_558 other upstream 136044 13218139 ~ 13218210 (+) True trnae-cuc_17
TU153770 other upstream 228791 13123055 ~ 13125463 (+) False ndufb3
TU153768 other upstream 236898 13114649 ~ 13117356 (+) False rpl37a
TU153727 other upstream 378617 12929215 ~ 12975637 (+) True G113979
TU154336 other downstream 931100 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 932305 14288355 ~ 14290960 (+) False LOC120568245
TU154338 other downstream 933487 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other downstream 936710 14292760 ~ 14295268 (+) False LOC120568245
TU154847 other downstream 1795746 15151796 ~ 15157199 (+) True G114789

Expression Profile