RNA id: XM_039816177.1


Basic Information

Item Value
RNA id XM_039816177.1
length 3589
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC120568578
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12966466 ~ 12975328 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtccggATGTAGCATCACATGAATTGACTGTCAACATGCAAGATGGCCACGCATCACAGGCAAAATGCTGCTGGGCGGAGAAAAGTACAGGTGTCCTATGTCATTAGAGATGAGGTGGAGAAGTACAACCGAAATGGGGTGAATGCACTCCAGCTGGACCCTGCGCTGAACCGGCTCTTCACTGCTGGAAGAGACTCTATCATCCGGATATGGAGTGTCTACCAGCATAAACAGGACCCATACATTGCCTCGATGGAGCATCACACAGACTGGGTTAATGACATAGTTCTCTGTTGCAATGGCAAAACATTGATATCCGCCTCATCAGACACCACAGTCAAAGTATGGAACGCGCATAAAGGCTTCTGTATGTCAACGTTACGAACGCACAAGGACTATGTGAAAGCTCTGGCCTACGCTAAGGACAAGGAGCTTGTGGCATCAGCAGGTCTGGATCGGCAGATCTTTCTTTGGGATGTGAACACACTAACAGCACTCACTGCTTCCAACAACACTGTCACCACCTCATCTCTCAGTGGGAACAAGGACTCTATCTACAGTCTGGCTATGAACCAGATGGGCACAGTCATTGTATCTGGATCCACAGAAAAGgtTCTGAGAGTTTGGGATCCTCGaacatgtgcaaaactgatgaaGCTAAAAGGCCACACAGACAACGTCAAGTCGTTGCTGCTGAATCGAGATGGCACTCAATGCCTGTCGGGCAGTTCAGACGGCACCATCCGCCTGTGGTCGCTCGGCCAGCAGAGGTGCATCGCCACCTACCGGGTGCACGATGAAGGGGTCTGGGCCCTGCAGGTCAATGAGGCCTTTACACATGTCTACTCTGGAGGCAGAGACAAAAAGATCTACTGCACTGACCTACGTAACCCAGACATCCGTGTGCTCATCTGTGAGGAGAAGGCTCCGGTGCTCAAAATGGAGCTGGACAGATCTGCTGACCCACCTCCAGCAATCTGGGTCTCCACCACCAAGTCATCCGTTAATAAATGGtcTCTAAAGGGAATGCACAACTTCCGGTCATCAGGGGAGTATGACAATGACTGCACTACCCCTCTGACACCACTGTGCACTCAGCCAGAACAAGTCATCAAGGGAGGTGCCAGTATCATACAGTGCCACATTCTGAATGACAAGAGACACATACTCACCAAAGATACCAACAACAATGTGGCTTTCTGGGATGTCCTGAAGGCTTGCAAGGGTGAAGACTTGGGGAAAGTGGAGTTCGATGAAGAGATTAAAAAGCGCTTCAAAATGGTCTATGTGCCAAACTGGTTCTCTGTTGATCTGAAAACTGGAatgcTCACTATCACATTAGATGAGAGCGACTGCTTCGCGGCCTGGGTGTCTGCAAAGGACGCTGGGTTTTCAAGCTCCGATGGATCCGACCCAAAGTTGAACCTGGGTGGACTGCTGCTTCAGGCTCTGTTGGAGTTCTGGCCCAGAACTCGCATCAACCCCATGGACGAGGAAGAGAACGAGGTGAACCACGTGAATGGAGAGCAGGAGAACAGGGTCCAGAAAGGAAATGGATATTTCCAAGTGCCACCACACACGCCAGTCATCTTTGGGGAAGCCGGAGGCAGAACTCTATTTAGGTTGCTATGTAGGGATTCAGGTGGAGAGACTGAATCGATGCTGCTGAACGAGACGGTTCCACAGTGGGTTATTGATATAACTGTAGATGTGAGTACAATCATGTTTCCATCTGTATTTGActtaaaatgtaatcaaataaaacaaagccATCAGGATTACAGGTTAAATaAAGATCATCAACCTGAACGATTTCGGCAGACCACCAGCTCCTCAACCAACGATAAGCCGGGGGagcaggagaaggaggaggacatGGCAATGCTAGCCGAGGAGAAGATCGAACTAATGTGTCAAGACCAGGTGCTAGATCCCAACATGGACCTGCGAACAGTTAAACATTTTATCTGGAAGAGCGGAGGGGACTTGACGCTTCACTATAGGCAGAAGTCCACGTGAAAATCCTGATTTTTAAAACAAGAACTCTTCGTCATTTGCCAATCACCACCCACCTCTGACATGTAGTACCCTAAACCCTATTGTGTGGTCAGGAGTCACGGTATCAATGAGAATCCAGTAAAATTTGTGAGGACTCATGGTGTATCATAGGGAACCGACCAGAACAGGCCGGAGCAGCCAGGACACCTGGGAGAGAAGTGGTCCGTagtttcttctgtttttttgttgtttttttttcggtttGAAGAAAAGGACTCTGTTTCTCCAGCGCTCaccaatttcttttctttttactttgacTGCAGTTTGTTCTTTCCTTCTGATTggcgttttattttgaagcgaCTGAAGTTACAGTACTTGTTTGTGTCTgagcgtgtgtgtatatgcacatGGATGTAGTAGACTTGTTTGTTCGTTCTAGTACATTCCAGAAACGGTCCTTGTTCTACAAATACTTCACACCCGTCTCAGCAGTATCAGCAGTTTAGGAGTGCACTTGGACTCTGGGTAGTGTCAGCAGTCCCTCAAAGCAATCCTCTGTTCTTCTGTCATCTTAACTTGAACTTAACCTTAACTTAGACACAGAATTATTGCAGAGCCTGAACCTCATTGACAGAAGCGCTTGTCTTTGTCAATTATTTTAGCTGTTCTCAATGGActgaatgttatttttttgtaaatatatgtACAACATTTTTGATTTAAGTGACTGTTTTCTTTTGGTTTtgcagctgtttttattttgttgttgtacaGTTTACTTAAAACCAACACTTACTTTTTCCAAATCCCTGGAGCACATTAATGAAGGTAATTTGACTTGatgttaaaaatgacatttgttgcattttactCTTTAAGAATGCTAGTAGTCGTCCAAGTCATCTTAGCAATCGGGAAATTATATATAAAGGTATATATCTTTAATAACTCATGCTTACCACTCTGCGCTTGGGTCACGAGCAGTGACTTTTATGACAGTGAGGGCTGTTCCTAATGTATATTTCATTTAGAGTTAATAGGAGTTCAATGAAACAAGAATATAACTTGAAGGGTAATCTCATTCAAGAGAATATGACTTTTCAACCACTGTGGGGAATTTaccaaactaaaataaaacataatacccatttctctctttgtgtcaCCAAGCAGAACAACAGATCTTTTCAGTGTAAATTTTCTAAAGTTAATTTTGCCatcaaagagtgtgtgtgtaacgcCATAGTGGGAACGCATCGAGTGAGCTCTAATTGGCCAAGAACATGATGGGTACCATAATTAGGCCATAACACTGCAATACCCcttgttgtaataatttgtgaaatatgtatattttagGCATTCAAATAAATGAATTGGAATGGTTTAACATTGACAGATTTATGGGAATTATAAATGGATGTTTCTTGAGATGTAATGTGTTCAGCTGATGACTGTGAAAAACAAGGGACAATTTCTTTTTAAGTCAAGTGATATGATTGTTTAACCATCAAAGATTCACCCATTTCACATTCATCAACAAATACTGCACTCATTCCTAATAAAACGTACAATTGATAAAA

Function

GO: NA

KEGG:

id description
K15361 WDR48, UAF1; WD repeat-containing protein 48

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153687 lncRNA downstream 173439 12789839 ~ 12793027 (-) True G113945
TU153660 lncRNA downstream 207193 12757651 ~ 12759273 (-) True G113933
TU153583 lncRNA downstream 357897 12601180 ~ 12608569 (-) False nedd8l
TU153585 lncRNA downstream 357897 12601180 ~ 12608569 (-) True nedd8l
XR_005640653.1 lncRNA downstream 365874 12585529 ~ 12600592 (-) True LOC120568043
XR_005640636.1 lncRNA upstream 47942 13023270 ~ 13039958 (-) True LOC120567923
XR_005640635.1 lncRNA upstream 47942 13023270 ~ 13038939 (-) False LOC120567923
TU153937 lncRNA upstream 96917 13072245 ~ 13167706 (-) True G114129
TU153945 lncRNA upstream 106286 13081614 ~ 13084384 (-) True G114131
TU153974 lncRNA upstream 113358 13088686 ~ 13091316 (-) True G114153
XM_039815915.1 mRNA downstream 21748 12931398 ~ 12944718 (-) True xirp1
XM_039815916.1 mRNA downstream 25698 12931398 ~ 12940768 (-) False xirp1
XM_039815917.1 mRNA downstream 28583 12931398 ~ 12937883 (-) False xirp1
XM_039815469.1 mRNA downstream 81019 12872858 ~ 12885447 (-) False LOC120568154
XM_039815468.1 mRNA downstream 81019 12872858 ~ 12885447 (-) True LOC120568154
XM_039815660.1 mRNA upstream 137035 13112363 ~ 13115289 (-) True cfap410
XM_039815658.1 mRNA upstream 157604 13132932 ~ 13151478 (-) True LOC120568264
XM_039815657.1 mRNA upstream 176767 13152095 ~ 13158290 (-) True LOC120568263
XM_039816319.1 mRNA upstream 210926 13186254 ~ 13195957 (-) True tmbim1a
XM_039816525.1 mRNA upstream 221411 13196739 ~ 13207620 (-) True casp8
XR_005640810.1 other downstream 197841 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 363557 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 748199 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2077514 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 2077619 10887007 ~ 10888847 (-) False LOC120567758
TU153973 other upstream 109233 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 1638285 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1820590 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 2314858 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 2314858 15290186 ~ 15304610 (-) False mfsd8l2

Expression Profile