RNA id: TU154504


Basic Information

Item Value
RNA id TU154504
length 1803
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G114538
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14440881 ~ 14447933 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATGCTGAATCCTCTCTCCATCACTGTGTCCATGCTGGGTATAGTAGGAGGTAAGGATGTCTACGAGTCCCATCATCTCCTGCTGCAGGGAGTTGACTTTAGGGTCTGGGTGCTTTAGAGGTTTACCCTCCTCTCCTGACTCGTGGtctgcacacaaacactcccACTGCTGATCCAGAAGCCTCTTGATCTTCTTTATGTGGTGGACCACTACTTCTGTTTCATCTGAAGCGTCTCCAGCTTCCACAGACACTAGCGGCTCTTGACTTCTTTGTCCATTTGTGGTAACAGGTCTTGCATCTGGACTTCTGGACACTTTATTATTTGGTTCAATGGACCTCACCGCTGTCTCATCTCCATCCTGGTCTACCACCACCCTCTCTGCACGGACCCACACCGCAGGATTCCTGATAAGGTGCTCCATCTTCTCATCTTTCCTTCTgctctcctcctgctgctccctCAGCAGCCCTAAGGTCCTCTGAAGCTCCAGGCCAGTCTCATGGAGCTTCTGCTCCAGCACAGCTACCTTAGCCTGCAGCGACGTCACCGTCAGCAGCTCATCCAGATCTGTACTAGTCCTCCACTCGTGTGTGGGATTAGAGTCTTCTTGACTGACGCTGTGATTTCTAGGAAACATGATGTGACTTTCATGCCGAGGCCTTTTGCTGTCCACTGTGCCGTAGTGGGATGAGGTGTAAGGGTCTGTGGTTCCATTCATTGAGGGAGGTGGCATATGTGGATTCAGGCCCAGACGGAGCCTTTCTCTTTCCTCCTGGAGGATGCAGATATGCGCCCTGAGCTCTGGAATCACCCTCATCTCCATCTCCAGCTCCCCCACACGTTCGAGGGCCTCTGTCAGGCGCCTCAACAGGCCTGAGCAATCCTGGGGTCGAGGGCTGTCCGGTAAGTAGAAGACGTCTTCACAGGATGTGATTCTTTCTTCAAGGTGATCCCTCGAACTCCGAAGGCTGCCGGGGTCGTCTGTGGACTCTGATCCTTGTCTCAGTAATACTGTGAGTGGCATACTGGAGGCACGCAGGAGATGAGGTCTGATGTGCTCACCGAGAGGTTGCTCATCAAACTCCTTGATTCTGGCCTCCATGTCTGCCAGGGATCTGAGCCCTGTGGGAGAAAGTTGCGACCTGTGATCATCATTTGCCCAGGAAGTGTAGCCATGGTGATGACCGTCTGACAGTCGGGACCTAGGGCCAAGAGCTCCAGTAGATCCCCAGGGGCTCGAGCGGTAGCCAGACCCAGAAGGGTTGAGGTGCCTGGGAAGAGTGCTGGCTCTGGGGCCTTTGCTTCGGCGCTGGATGGGTACTCTTTTGATTGTGTTGCCTTTCTCTATGTCATCTACGTATTTTAGGAAGTCCAGGTCAAGTCGAAAGCCATAAGGGGTTTCCACGGAGTACGGGGGCTTCCCTTTGATTCCATTCTTTTTTACCGTTTTGTCCTTCCATCACTTTTTTGTCATCAGTCGTTCAAACAATTTGTTGCCATATTATCTGGTTGGATCTTTGGTGtTGGTGACATGTGTTCAGCAGTTTTCTCCACTTTGTCTTGCTGATGTGAGGGCGTGTTTGTCAGACAGTCCACTACAGTCTGCTCTCAGCTCAGTTCAgcctgtctgtccgtctgtctttcTCCTGAGAAGGCAGGGACGTGCTGTCAGGGAGAGTGGCATGCCGCGGCTGTTTGGTAAATGCCAATGTGCAGCCCTTGCCATAACAGAAGCTGGGTTTGcttgtgtgtgaaagagagcaCGGAGCAGGGAGGGGCATGTGAGCAAGCCTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154466 lncRNA downstream 120118 14319343 ~ 14320763 (-) True G114518
XR_005640651.1 lncRNA downstream 269407 14124703 ~ 14171474 (-) True LOC120568036
XR_005640652.1 lncRNA downstream 269407 14128319 ~ 14171474 (-) False LOC120568036
TU154384 lncRNA downstream 385358 14049494 ~ 14055523 (-) True G114456
TU154346 lncRNA downstream 488728 13949967 ~ 13952153 (-) False tfr1a
TU154487 lncRNA upstream 8691 14456624 ~ 14466248 (-) False G114530
TU154511 lncRNA upstream 69543 14517476 ~ 14517893 (-) True G114544
TU154601 lncRNA upstream 165680 14613613 ~ 14618164 (-) True LOC120568687
XR_005640749.1 lncRNA upstream 166499 14614432 ~ 14618224 (-) False LOC120568687
TU154619 lncRNA upstream 241524 14689457 ~ 14690066 (-) True G114633
XM_039816666.1 mRNA downstream 4675 14430089 ~ 14436206 (-) True LOC120568914
XM_039816665.1 mRNA downstream 4693 14430089 ~ 14436188 (-) False LOC120568914
XM_039814540.1 mRNA downstream 11323 14422482 ~ 14429558 (-) False LOC120567626
XM_039814541.1 mRNA downstream 11608 14422482 ~ 14429273 (-) True LOC120567626
XM_039814542.1 mRNA downstream 11626 14422482 ~ 14429255 (-) False LOC120567626
XM_039815775.1 mRNA upstream 13539 14461472 ~ 14537465 (-) True LOC120568348
XM_039814714.1 mRNA upstream 103104 14551037 ~ 14553669 (-) True LOC120567737
XM_039814846.1 mRNA upstream 113574 14561507 ~ 14564705 (-) False LOC120567803
XM_039814845.1 mRNA upstream 113574 14561507 ~ 14564705 (-) True LOC120567803
XM_039816099.1 mRNA upstream 178234 14626167 ~ 14651376 (-) True scp2a
TU153973 other downstream 1352318 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 1672256 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 1837972 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 2222614 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 3551929 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 165680 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 347985 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 842253 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 842253 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 963229 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile