RNA id: TU154601


Basic Information

Item Value
RNA id TU154601
length 2309
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120568687
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14613613 ~ 14618224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACGCAATGGTCACAAAGGAGAAGAGGAATCGGAatcacattcatttttaatttgcaTAATTGCATATATCTTTCATACAAAAAGCTTATTTCCAAGGTTGGATAGGGACATAATTTGTGGAAAAGTTAATGCATGGATAATAGACTTCTGTCACAGTGGCAGAAGTGATGAAATGGCACAAAGGCATGTAACAGTAATAACTATGAAGATGAAATGTGTCtctctagatagatagatagatagatattaatCCTGTTGTCTTGATCAAATGAAATCAGTTTTTAACCATAACAGATGTTTTGTTTACAGTGAACTCTAATATGATCTAAAATGACTGCTGGTAAGGTAGGACACATATAAGGGGATTTTTGGGGAAAACTTTAGTtaaatgagaagactgatactACTGCCATGCCTGTGTGTCATTCAAGGTTGTAGCATCAACCACTTTTCTGTCTTTCAAACTAAGATGACAATTTATTGACACACAGAAGTCTAGACAACAAATGAATACATTGATTGTTTTTGGCCTTGTAGGCTCTCACCTGCTCCCCTTCTTTGACAAAATCTTTTCTGCAGATATGAGCCATAATGCCTGTGGCCAGTGCGTCACCCATCACATTGACCATGGTCCTGAATCGATCCCTGGGTAATAAAATGATAGAAGTCATCCACAGTGTTAACAAAGgTTTCCTTGTGGCCCTTAGGAAATTCTCCGAGGCCAGTACCGGTGTGCAGACCAGGGGTTGGGGACCTTTGGCTTATAAGATCGGGTCAGCATTTCTACACTAAGTCGCATCCTACAGAAACATAACTTCAGAATGGAGCAGCTGTACAGGGTGCCATTTGAGAGGAACAGTGTCAGGGTCAAGGATCTGCGCCATGATTATGTGCAGACAGTTCTGGATTTTGATGCCGTCGAACTGCCACATGAGTTCATCTACGTGGATGAGGCAGGCTTCAATCTGGCCAAAACCAGGCGTCGGGACTGTAATGTAGTTAGAAAAAGGGCCGTTGTAAATGTCCCTGGGTAGCGTGGGGGAAATATCTCCTTGTGTGCTGCAATTAGTATCCAAGGAGTACTACATCACTCTGCCACTATAGGTCCCTACATTACAGAACAGATCATTGCATTTCTAGATGCACTACATGCAGTTGTGCAGGACAGACCATTGCAGCCCAGGTTTGTTGTCATCTGGGATAATGTTAGTTTCCACCGGGCTGCTCTGGTCCGAGATTGGTTCAACAACCATAACCATTTCACACTTTTATACCTGCCCCCTTACAGCCCCTTTCTAAATGCAAGTATATGACCGCATACCTCTTCTGCAAGCAATGGAAGAGGCATGCGGATATTTTCCCCGATAACCAAGCCCGCGAGGACATTGCCTGTGATGTTGACAAGGTCTTGTGGCCAGATCCGAACAGAAGGCGGGATCCATAagccccccaacccccaccacacacacatgcacacatgcacacacacacacacacacacaaaacaatatcCCAATAGCAATTTATctcttatttctttatttctgtaaacatctttgttttttgtaaaaactCTTGTTTGATTACTGCAGAAATTCTACTCTTGAGTTTTACAGAAGACTGAGTCtgagaaaatgacaataaaaatagaaacacaaagactgcagtgttttatataaagcacATCAGTGGGTTGCTGGTGATATGAAAGTGTAATTATAATGCAGAATTTCATTTTTACAAAGGAGTGTTAAGTTTTCATTGCAGTGTGTCATTTTGGCATAGATGTGAGTTGTTAATCTCCATGTGCTATGTCTGATTGGCTTGTGTGTAGAGACATAATGAGCCAAATTCTGCAAAAAGTGTGTAAGCAATAGACAAAAACAAGGAACACACTGCTATTCAAATATGCACACTGACTCATCAAATGGGCAAACACCTGTCACACAGTTTTACAATTAGCAATCAGAGCTTAAGCATAAAAGGGCAACAGGTGAGCTCTTCtgttttggaattttttttctgcctggaGATGGAAAGTGTATGACCAAAATCCACAAACGCATATATCCCTTCTCCAAGCAATGGAAGACGTGGAGATATAGCAGTTGATGCTTTTCATGGCTGGATTCGCCATGCTAGGCGAAATTTCCCCCACTGCTTGGCCAGGGAAAACATTGCTTGTAATGTGGATGAGGTGCTGTGGCCTGACCGAAACAGATGAGAGGATGcagcatagtttttttttttttttttactgtaactgtatacagtatacagtacactgtgtacattgtttttgtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154511 lncRNA downstream 95720 14517476 ~ 14517893 (-) True G114544
TU154487 lncRNA downstream 147365 14456624 ~ 14466248 (-) False G114530
TU154488 lncRNA downstream 154688 14418851 ~ 14458925 (-) True G114530
TU154504 lncRNA downstream 165680 14440881 ~ 14447933 (-) True G114538
TU154466 lncRNA downstream 292850 14319343 ~ 14320763 (-) True G114518
TU154619 lncRNA upstream 71293 14689457 ~ 14690066 (-) True G114633
TU154623 lncRNA upstream 75468 14693632 ~ 14693957 (-) True G114636
TU154667 lncRNA upstream 133081 14751245 ~ 14751528 (-) True G114661
XR_005640836.1 lncRNA upstream 162112 14780276 ~ 14782472 (-) True LOC120569096
XR_005640751.1 lncRNA upstream 336414 14954578 ~ 14958403 (-) True LOC120568695
XM_039814846.1 mRNA downstream 48908 14561507 ~ 14564705 (-) False LOC120567803
XM_039814845.1 mRNA downstream 48908 14561507 ~ 14564705 (-) True LOC120567803
XM_039814714.1 mRNA downstream 59944 14551037 ~ 14553669 (-) True LOC120567737
XM_039815775.1 mRNA downstream 76148 14461472 ~ 14537465 (-) True LOC120568348
XM_039816666.1 mRNA downstream 177407 14430089 ~ 14436206 (-) True LOC120568914
XM_039816099.1 mRNA upstream 8003 14626167 ~ 14651376 (-) True scp2a
XM_039815681.1 mRNA upstream 35244 14653408 ~ 14658272 (-) True czib
XM_039815680.1 mRNA upstream 40708 14658872 ~ 14667205 (-) True uck2b
XM_039815679.1 mRNA upstream 56253 14674417 ~ 14677944 (-) True zte38
XM_039817011.1 mRNA upstream 61243 14679407 ~ 14683559 (-) True prdx1
TU153973 other downstream 1525050 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 1844988 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2010704 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 2395346 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 3724661 10887089 ~ 10888952 (-) True LOC120567758
TU154687 other upstream 177754 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 672022 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 672022 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 792998 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 793499 15411663 ~ 15411840 (-) True LOC120569141

Expression Profile