RNA id: TU154769


Basic Information

Item Value
RNA id TU154769
length 304
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G114745
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15065090 ~ 15065393 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctacatgatacgcaggtatatgcagtatacccactaagaaatctccaggatttccatatacccacttaaaaatgtgcaatgatacgcaacaacatatatttttgtgacagaactttcacttcagatatttgtattcacaaatacgGGGTTGAGTAACGtgacaacaaacaaaactaacacTGCAGAACAGGCAGAGAGACTTTTCTCATCTTTCACTGACCCGCTCCTCGCTGAACGAGTGTGTATTGTGTGCGTAGCGACTGGGCCCCAATGCTCCGCCTACACTAATGCCACCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154767 lncRNA upstream 39988 15022277 ~ 15025102 (+) False ro60
TU154747 lncRNA upstream 72007 14990988 ~ 14993083 (+) False rgs18
TU154653 lncRNA upstream 252881 14811662 ~ 14812209 (+) True G114650
TU154563 lncRNA upstream 371188 14693566 ~ 14693902 (+) True G114585
TU154529 lncRNA upstream 438320 14626167 ~ 14626770 (+) True G114561
TU154770 lncRNA downstream 730 15066123 ~ 15066439 (+) True G114746
TU154771 lncRNA downstream 2756 15068149 ~ 15068451 (+) True G114747
TU154853 lncRNA downstream 95882 15161275 ~ 15251219 (+) True G114793
TU154948 lncRNA downstream 301564 15366957 ~ 15368773 (+) False LOC120568540
TU154979 lncRNA downstream 351339 15416732 ~ 15418048 (+) True G114889
XM_039815943.1 mRNA upstream 3123 15027835 ~ 15061967 (+) True cdc73
XM_039816193.1 mRNA upstream 38882 15013743 ~ 15026208 (+) True ro60
XM_039814524.1 mRNA upstream 62058 15001264 ~ 15003032 (+) True LOC120567612
XM_039816499.1 mRNA upstream 68928 14994823 ~ 14996162 (+) True LOC120568793
XM_039816646.1 mRNA upstream 72700 14985777 ~ 14992390 (+) True rgs18
XM_039815944.1 mRNA downstream 5090 15070483 ~ 15088029 (+) True LOC120568423
XM_039815945.1 mRNA downstream 5090 15070483 ~ 15088029 (+) False LOC120568423
XM_039815946.1 mRNA downstream 5090 15070483 ~ 15088029 (+) False LOC120568423
XM_039815947.1 mRNA downstream 5090 15070483 ~ 15088029 (+) False LOC120568423
XM_039815949.1 mRNA downstream 24026 15089419 ~ 15093399 (+) True LOC120568425
TU154338 other upstream 769097 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 769822 14287150 ~ 14295268 (+) False LOC120568245
TU154339 other upstream 769822 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 774130 14288355 ~ 14290960 (+) False LOC120568245
unassigned_transcript_558 other upstream 1846880 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154847 other downstream 86403 15151796 ~ 15157199 (+) True G114789
TU155017 other downstream 407350 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 455406 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 656746 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 657114 15722507 ~ 15722573 (+) True LOC120569146

Expression Profile