RNA id: TU154790


Basic Information

Item Value
RNA id TU154790
length 4204
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G114752
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15076141 ~ 15081980 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTACTTTGAACATGAATTTGCATCCAAGCAGCAGTGGGTCTTAGAGCTACgttcgggcccaaaaaatcaagcccgacccagcctgagcccgtgcacgttgtgtccgagcccggcccgacacattaactggaattatgagcccgagccctatttcaacccgacacttttttaatccgtgggccgttataactgacgttctcaactacaattcagagttgtttgaactgcagaaatctgtttaaaattatcttaaaggggtgatagaatgattatatagggtattttacactgttccttaaggtctcctaatggggtatgtaactttggttgggctgaaaattgcccgaatgatattttattaggcccttaactaccctgtgaatatggctctatttggaacaagagcttttcttccaaatatggtatgctgatgaatattcagaatgagctacgcgctgattggtttgagcaaactacatagaaacacatgggagactctcatatttcagacactgcaaagttatacattgtttatcgggctatttcgttattaaaatCACTTCTGAatcttttttaagcgagaaatcaactatataaagctcaaatatgggccgttttacgaaaattgatggctaattgcaaatttggtaagactgtgtgtcggagttcagccgccggtgctgcctcttcgcccggcctgccttccttcacagaccccggcctgctatgaggtacttggagctcggtcacggctgcagcccacagcagggactaccaacaccgctgccctgacagagctccagggccttcaactcccctcttcctgctagctaaatggcccgttgtgtgagaatggcccgttgtgtgagagtgagagcgccgtcagcgagcttgttacaccagcaatctgttaccacatgttacacacatgtcacgccacttatacaaaatctaattaaaggtcttataaagctaacaacggtgtccgatttcaagttaatgaatatttgtgaagacaaagtgttttgttagctgtgactgtcccttcaatcctagctatgtgtagctacaaaccacggatagttagcttccttttcgccttaattcgattatatttacagtttgaatttcgtcacgccacttatacaaaatctaactatatgtcttataaacctaacaacggtgtccgatttcaagttaatgaatatttgtgaagacaaagtgtttcgttagctgcgactgtcccttcaatcctagctacaaatcacggatagttagcttccttttcgccttaatttgagtatatttacagtttgaattttgtcacgccacttatacaacatctccctaaaggttttataaagctaacaactgtgtccgatttcaagttaatgtatatttgtgaattccagaggaattctaagaggaggctggctagctagctctcattgatagagctacatccagccgcaggctctatcaatgagactcgcggacaagcggcgtttatttccccaatagtttgtttaaataactcaacacattataattacacacattaaaagattaactggaacctgtggtaacagattgctggcgtaacaagctcgctgaccgtgctctcactcacacacaccgggcatttagctagcaggaagaggggagctgcaagccctggagctctgtcagagcaccagcgtttagtagtccattatccaaaaaccggtgactttgcgcgggtatggagtgctgtgggctgccagtcgtgacggagctccaagtacctcagagcaggccggggtgtgtgaaggaaggcaggtcgggcagcgaggcagcaacacaggcagcaccggcagctgaattccgacacacagttggacaaaatttgcaattagccatccattttcgtaaaatggcccatatttgagccttacatagttgatttctcgcataaaaaagtttcagaagtgaattttgtaatggaatagcagagatatgcgcgacctagattcagaagactacctgatctcaggtcagttgtgtagcctatgtaaatgttggggcgtgaccgttctcttaatacacccatgggctgacaaaggttccagtttttgggaggttgacgtcaacttccagctttgttgggattcgcccgttttcagcggcagtttcaaaatatgaaattttcatagtaaaggggtgtcagtgggactttgagcttctatgtatgtcctatttacccacgaactgtcgttattcaactatgacagggtaaaatcggttttgcattctatcacccctttaatgaataatgcaacaggagcgaagcatgtaaactgcgctgtttgtttattcagaaaggaacggatcgcaaatggatctgaatgaagaaacgtaaaaaaaaaactcaacgtatttctctgtgagggcttgcccgcttgcctcgccctcaggggtagcctatgcttggagaagtaacaaaagaggacgttgaaggctgactatcatcttttctgccacggCGAGCCTGCTTCATGGGTCTCTTCATCATCCACTTCTCCGTTTTATTTGCTGTCATAGGCGAGAAGCggccgcacttaatgcactcaaCAAAGCCGATACATAGGCtatgttgtcactgcccacgacttgtttaaaatggctccatactgttgaagttaaaaagttaaaacccgGCTATAGTTTTGAAAACAGTGTACTTGCTAGATCTAATCAAatacactaatcagcatttgactgcctcacccaaactctagcttctaaagaattaattaggtcattgctgttatttagcataaatGTAAAAGCGCTGGAcgacttattgtttaaacaactttgagAGCCATCCCCTGTCGAGCCAGACGTGATTAAGACAAAGAACGAGTATTGCTGTAGTTTGGAAACAATTGACACCGTCTCGATAAGAACCATGTGACCGGGAGTAGCCTCAAGACACTGATTGGGAACATTCACCTTTCTTTTGAGAGACCtctgaccaataggggaagatttcatttgaggaaccaCCCAGATGTGGGGGAATAAATGTGTGATCCGGGGAAGGTCTCAGgacttcaatctgtgacccgcAAGGGAAGCAAGTTggagtccgctgtttacagtgtattgttttgtcatgtcgcatggctgcaatcTGTGTCCCCGCAAGGGGAATcatgtttgcagtctgctgctggcagtgtttcgtgtcttatgttttattgtgtcgttttcatgttgttttattaaaccctCTTGCTTAACTTCCAATTCGACCGTCagcctctccttcgtcctcagaaatctaagaacacgtcatttagCAAATATTCTTCCAACAATACCTCCGACTTTCatccaaacttgctcaaaggtaattctcccgtttttctttttttctttacatcctcaagctccatgttgcacttaagctccacAATACAGCCCGCAGCCCCGGGGTGATGCgtgcgagaggaggagactccgcgcatgacacatgttgcattttgtaactgtagtctaacttgtgtaactttttggacacatttgttactttggcctaaatagataatagttctgattatggcatagctttctccccacccaataaGGCTAaagtaaagataaaaaaaaacacaaatgcttgatcaagggtccggcccggcccggcccgaggatagtggcggaaaatAACGGCCCGGCCCAGCCCGaagtcgggccgggctcgggtcGGTCTCGGGCTAGGGCAGAGAAACGAAACTCTAGTGGGTCTCTTTGGTTATCActgtttatttatgtattttttattttgtgttattgCTTTTATTACACTTGCTTTTTGTATGACATTTTATACaatgttgtgtatgtatgtttctattatatggtgtgtgtgtgtgtgattctatGTTCTTTGGGTATTTGtatttcacttttctttttttttatctcaataaaaagatttaaataCCATAGGGGCTTCAAAGAGGGTACTGTCAATGGTGAGTGAAGGTTATGATATATACCCTAGCTATCCCAAAACCACTCAGTAAAGCTGTACTGGATTGATAcagatttcttttaaatgtccAGTGGCTATACATTCAGTTAAATTTTCATTACAGTAACTAGCCAGCTagataataaatatttaaaaagtaataCCAACTGAACATAGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154756 lncRNA downstream 73096 15001144 ~ 15003045 (-) True G114733
XR_005640751.1 lncRNA downstream 117738 14954578 ~ 14958403 (-) True LOC120568695
XR_005640836.1 lncRNA downstream 293669 14780276 ~ 14782472 (-) True LOC120569096
TU154667 lncRNA downstream 324613 14751245 ~ 14751528 (-) True G114661
TU154623 lncRNA downstream 382184 14693632 ~ 14693957 (-) True G114636
TU154900 lncRNA upstream 182540 15264520 ~ 15266224 (-) True G114836
XR_005640790.1 lncRNA upstream 305498 15387478 ~ 15393259 (-) True LOC120568803
TU154969 lncRNA upstream 325397 15407377 ~ 15407627 (-) True G114883
TU155136 lncRNA upstream 639039 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 653074 15735054 ~ 15735281 (-) True G115041
XM_039815948.1 mRNA downstream 31488 15039845 ~ 15044653 (-) True LOC120568424
XM_039816377.1 mRNA downstream 158710 14895172 ~ 14917431 (-) True LOC120568704
XM_039816378.1 mRNA downstream 159546 14895172 ~ 14916595 (-) False LOC120568704
XM_039814711.1 mRNA downstream 212451 14862531 ~ 14863690 (-) True rgs5b
XM_039814532.1 mRNA downstream 226331 14835084 ~ 14849810 (-) True LOC120567619
XM_039815956.1 mRNA upstream 38603 15120583 ~ 15127965 (-) False zbtb41
XM_039815955.1 mRNA upstream 38603 15120583 ~ 15127958 (-) False zbtb41
XM_039815954.1 mRNA upstream 38603 15120583 ~ 15127958 (-) True zbtb41
XM_039815295.1 mRNA upstream 55847 15137827 ~ 15146730 (-) False LOC120568089
XM_039815297.1 mRNA upstream 55847 15137827 ~ 15146730 (-) False LOC120568089
TU154687 other downstream 279097 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 460369 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 1987578 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 2307516 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2473232 12601180 ~ 12602909 (-) False nedd8l
XR_005640598.1 other upstream 208206 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 208206 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 329182 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 329683 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 330413 15412393 ~ 15412467 (-) True LOC120569142

Expression Profile