RNA id: TU154979


Basic Information

Item Value
RNA id TU154979
length 1317
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G114889
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15416732 ~ 15418048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTCTTAGTTGGTTGCCAGTAGAACACCAGTATAACCACTGGGGACAAGCCATCTCACTGGTGAACTGTCTCCCCTGTAAAGATTAACAAATCCCCTACTGTATATTAATGCTATTCCAACACTGCATAAGTCAGTGGCCAACTTGGGCCACCCCAGTCAAAAAGTCTGGACACACCACTGTGCTCAGGTCTGTTTCCCTGGCCCAATTAACCTTGGCTTCTTCTATATATTTCTTAAAATACCCTTTAACACTGTCAAATAAGAGCAGTTTTGTGTCCGGAATACAGTAATTCATACATGACATCTTTGCCTTTATTCCAGTGCAATGCTGAGTGTACAAAATTATTTTTCCCCTTAGGAAGACAAGACAATGTTAGTATTGTTTTCTTCAGTTCTGACATCAAAGCAGAACAGCGGAGTGTACTTTGACTCTAATGCACAATGGTGTAGTAGTTGGAGAAGAGTTCCTCCCCTACTGTAATGTCTCTGAGCGATACAAGGACAACACAGCGGAGAGGCCTCTGTGTGTCATGGCTGTAGTTGACATTTGGCAGATACAAGCGGAGCTCGATGGGAAATGTGTCCGGAACGTCATACTCCTGGTAGCACACGTTAGCAGGCAACTCATTTGAGCAGTTGTTCACATACTGACCAACAGCAAGTGGGTTTTGTGGACTGGCTGTCAGCCAGCTGGTGTCACTCATCAGGAAAGGCCCTATTCTGTCCCTGCCACTGCATGACTTGAACACCATTTTGGATATGCCTTTGTCATTTCCATCAACCAAGACACCATCAATACACCTGAATAAAAAAGGGTTTCTGATGGACTGGAGGAGAATTGGCTCATATGCTTGATATACTGTACCAGGATACATAGCCACTGTAGCTCCTTTGGGTACAAATCCTTTGGTAACAAACACTCCAGTTCCTGCAAAGGGCAAAGTGCTAGGTTTCCGGTCGATGCAGAATCCAAGAGACTGTAACATGGCATCATCTCCACACACTGGATTTCCTCCACACTGGTGTTCTTCACTTGTTACCTGTCTGAGAAAGTGGGTTTGAGCTGCTCGGAGTCCCCCCTTATTTGCCCCATTACTGAGCAGGACTCTGAAGAGCTGCAGCAGGCTCTGCGAAACCTCCTCATCTGGGACCTGTTTGTCTTTCGAGCGCTCCTTCACCTGCCGCAGCGTTTTCTCATTTTTAGACAGGTTCAGTACAACCCATGGGACAAATCGGTGTCTGTACGATTTCCATTTGTTCTGAAATCTTTTTAGAGCAGTTCTGAACATCCAGATCGACGTCTGAGAGAGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154948 lncRNA upstream 47959 15366957 ~ 15368773 (+) False LOC120568540
TU154853 lncRNA upstream 165513 15161275 ~ 15251219 (+) True G114793
TU154771 lncRNA upstream 348281 15068149 ~ 15068451 (+) True G114747
TU154770 lncRNA upstream 350293 15066123 ~ 15066439 (+) True G114746
TU154769 lncRNA upstream 351339 15065090 ~ 15065393 (+) True G114745
TU154994 lncRNA downstream 14623 15432671 ~ 15432944 (+) True G114904
TU154995 lncRNA downstream 18056 15436104 ~ 15437753 (+) True G114905
TU155002 lncRNA downstream 26430 15444478 ~ 15455375 (+) True G114909
TU155048 lncRNA downstream 131081 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA downstream 131258 15549306 ~ 15549920 (+) False G114944
XM_039816671.1 mRNA upstream 34402 15375813 ~ 15382330 (+) True b3gnt5b
XM_039816111.1 mRNA upstream 47952 15338557 ~ 15368780 (+) False LOC120568540
XM_039816109.1 mRNA upstream 47952 15338990 ~ 15368780 (+) True LOC120568540
XM_039816110.1 mRNA upstream 47952 15338990 ~ 15368780 (+) False LOC120568540
XM_039816112.1 mRNA upstream 57996 15338990 ~ 15358736 (+) False LOC120568540
XM_039816566.1 mRNA downstream 216 15418264 ~ 15421158 (+) True dcun1d1
XM_039816196.1 mRNA downstream 3692 15421740 ~ 15431774 (+) True ccdc39
XM_039814715.1 mRNA downstream 54654 15472702 ~ 15478462 (+) True asip2b
XM_039815636.1 mRNA downstream 61980 15480028 ~ 15483769 (+) True LOC120568251
XM_039815637.1 mRNA downstream 102734 15520782 ~ 15528442 (+) True zgc:153115
TU154847 other upstream 259533 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1120739 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 1121464 14287150 ~ 14295268 (+) False LOC120568245
TU155017 other downstream 54695 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 102751 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 304091 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 304459 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 305087 15723135 ~ 15723203 (+) True LOC120569144

Expression Profile