RNA id: TU154995


Basic Information

Item Value
RNA id TU154995
length 1265
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G114905
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15436104 ~ 15437753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCTCCGTACAAATCAGTAATCACACCTTTAGAAAGCACTTGCTTGGCAGACTAAAAAAGGCGAACTTTTCATATTTCATTAAAGAGTAATGGTTTTGTTTTAACCTTTGTCACATCATATGCTTGAGTCGCTCCTGACAAGGTTGTTCTTCGAGGTATTTCTGTTCAGGTGTTTAACTGACACACCCTCTGAATAATAAGGGTGTCGCTTCCTGATACACAACAAAGGTAACCAGCGACTCTGTGAAAGCAGACGGAACACGTTTCCACTacagatttcactctttttttggGGGAATAAACCTTGCAATGCTGCTGCTGATCCTGTTTGCTGGATGTCTGGCCACATGTGCCGCACAGACAACTCCTACTCCCGTTAGTCTTACGCAGTCAGTCCAGGCAACATCAGTCGTGGCACCTGGTTTGAACGCAGATGCTGTAGCATTCCTCCGGGCAGCTGTTACGTCCGATTATGAGCTAAATGAAACAACAATAGGTCCAGCCCTGCTCCAGCTGAAGACCCTTATCCAGCATCTCCAACCAGGTGTGGACTTCATGGTAACAGTAAAGAACATCACCAGAGTCTGAAACTTCAACTCACAAGTGTCTGTGTTTGGCAAGCCTTGAAACATGtgattataaaataataatatcctCTATGTGAATGAGGAAGATCCTCAATGGAGTTTCTAATTTCACTTTTGGAGATGCCCCTGAAAATGCAACCTGCGTACCACCACTGAGGACAATATGTGAGTCTTGTTTAACTGACAACATTAAATTGAACAAGGCCTGATTAGGTCTAAAATTATAAAAGTACAGTTACTGCATTTGCTTTGATCTATCAAAGAGAGGTATGTAAAAAGGGATAAAGTCACATGTTTAATCAGAATTTGAATTAGGATGTTTTAAACAAGACTCACACATTTTCTGTGGTAATGATTATTGAAATAAACCCTATAACCCCACTGTGATGTACAGGATGTagctgatgtaaaaaaaaaaaaagttatttaggTGCAtccatttttatatttaaaatgtgtaaatgtaaagacaaatgtaaagacaaagacaaattgtgtctattttataaaaaataaattgctaATATCAACTTAATACTTGCTGTCAATTACAAACAAAGTAATGCAACTATATTTCCAGTAATATATGTCAAATCACCTTTTAATTGCCAAAGACACATGGTCACTGAGATGCTGTACATTTCAATTGTATGTAAGTGCATTGAAGAAATAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154994 lncRNA upstream 3160 15432671 ~ 15432944 (+) True G114904
TU154979 lncRNA upstream 18056 15416732 ~ 15418048 (+) True G114889
TU154948 lncRNA upstream 67331 15366957 ~ 15368773 (+) False LOC120568540
TU154853 lncRNA upstream 184885 15161275 ~ 15251219 (+) True G114793
TU154771 lncRNA upstream 367653 15068149 ~ 15068451 (+) True G114747
TU155002 lncRNA downstream 6725 15444478 ~ 15455375 (+) True G114909
TU155048 lncRNA downstream 111376 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA downstream 111553 15549306 ~ 15549920 (+) False G114944
TU155054 lncRNA downstream 128641 15566394 ~ 15568494 (+) False slc35a3b
TU155105 lncRNA downstream 187349 15625102 ~ 15625323 (+) True G114991
XM_039816196.1 mRNA upstream 4330 15421740 ~ 15431774 (+) True ccdc39
XM_039816566.1 mRNA upstream 14946 15418264 ~ 15421158 (+) True dcun1d1
XM_039816671.1 mRNA upstream 53774 15375813 ~ 15382330 (+) True b3gnt5b
XM_039816110.1 mRNA upstream 67324 15338990 ~ 15368780 (+) False LOC120568540
XM_039814715.1 mRNA downstream 34949 15472702 ~ 15478462 (+) True asip2b
XM_039815636.1 mRNA downstream 42275 15480028 ~ 15483769 (+) True LOC120568251
XM_039815637.1 mRNA downstream 83029 15520782 ~ 15528442 (+) True zgc:153115
XM_039816218.1 mRNA downstream 96904 15534657 ~ 15536850 (+) True tsen15
XM_039816217.1 mRNA downstream 109036 15546789 ~ 15548920 (+) True sec22ba
TU154847 other upstream 278905 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1140111 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 1140836 14287150 ~ 14295268 (+) False LOC120568245
TU155017 other downstream 34990 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 83046 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 284386 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 284754 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 285382 15723135 ~ 15723203 (+) True LOC120569144

Expression Profile