RNA id: XM_039814715.1


Basic Information

Item Value
RNA id XM_039814715.1
length 1196
RNA type mRNA
GC content 0.42
exon number 4
gene id asip2b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15472702 ~ 15478462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGTCGTTTGTCATCCACTCTGTTGGAGGCAGAGATACCTCCTCACAACCAGAAAGAAGCACGAGGGAGCTGAAGTGAGGGGTTTAGAGCTGAAGTGAGGGGTTTAAAGGAGAATAAATCTCATCATCATTATGAGGACGATCAACCACTGGTTGTGCTTCTTCCTGCTTGCCTTCCCGCTTTCCTGGGCAGAGGACACGAAGAAAGATGTGAGGAAGACTGAGAATGACACAGTTTGGAGCCAAGCGAAGGCCAGACAACTGTTTGCAAGGAGAAAGATTTCTCCGCCACAGGAAAGTAACACTACTAAACACAAGTCAAACCTAATGTCCCCAGCACGTCGCTGCGGCCGCCTGATGGAAAGCTGCTCCGCCCACGTCCTGTGCTGCGACCCCTGCGCCTCCTGCCGCTGTCGACTCTTCAACACCATCTGTCATTGCTGGAGGATGAACCCGCTGTGCTTAAAGAAGACGTAGATGGAGCACAAAACCCACACGTGCACAGACAAAGCCCAGCACCAGGACATATACAGTGATAGACATATATACGCATACAAATACATATACACTGCCTTCTAGCCTGTGGGTGCAGCTCAGAGAATAttagaaacatttgaaaaatcatgaaaaaatttaagtatttccattgTCTGTGGCTTCAACACTTGAGTGATGGACGGGGACATGGAAATGAAAGGGTGAAGCCTGTATTTTTCTGTCTTCTGAGGCTTGAATAAGAAATACTCACATAAATGTTTACATAATATCCAAACACCCAACATGTGTAACAACATATGGGTGACATATGCTTTTTCATGTATGTAGACAATCAACGTGTAAACTGTGTGTTGTGCCTTGGTTATTTCGCGCTATTGCTGCTTTTGAATATCTTTATCACTTCTGCTCTCCTGCCATACTAAGCATATGGTAACCTATAATAACCAggtttagatttatttttttaaccttactACCGTACAGACTAAATgtggaaataaataaagcaaaatCATATGTTTTGAGCCATCAACGGTTAAAAAACAGATTGTTCCTTTCCTATGTAAAAGAAATATGACTTGGAGAACACATTTAAGTCCTGAAATGTggaattattaattattcacatgTGGATTTATGAGTTAAACTTTTGCTATTGAATAAATATATCATAAGCCTATATTATCCTTGTTTTTGT

Function

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155002 lncRNA upstream 17327 15444478 ~ 15455375 (+) True G114909
TU154995 lncRNA upstream 34949 15436104 ~ 15437753 (+) True G114905
TU154994 lncRNA upstream 39758 15432671 ~ 15432944 (+) True G114904
TU154979 lncRNA upstream 54654 15416732 ~ 15418048 (+) True G114889
TU154948 lncRNA upstream 103929 15366957 ~ 15368773 (+) False LOC120568540
TU155048 lncRNA downstream 70667 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA downstream 70844 15549306 ~ 15549920 (+) False G114944
TU155054 lncRNA downstream 87932 15566394 ~ 15568494 (+) False slc35a3b
TU155105 lncRNA downstream 146640 15625102 ~ 15625323 (+) True G114991
TU155115 lncRNA downstream 198631 15677093 ~ 15677343 (+) True G114998
XM_039816196.1 mRNA upstream 40928 15421740 ~ 15431774 (+) True ccdc39
XM_039816566.1 mRNA upstream 51544 15418264 ~ 15421158 (+) True dcun1d1
XM_039816671.1 mRNA upstream 90372 15375813 ~ 15382330 (+) True b3gnt5b
XM_039816109.1 mRNA upstream 103922 15338990 ~ 15368780 (+) True LOC120568540
XM_039815636.1 mRNA downstream 1566 15480028 ~ 15483769 (+) True LOC120568251
XM_039815637.1 mRNA downstream 42320 15520782 ~ 15528442 (+) True zgc:153115
XM_039816218.1 mRNA downstream 56195 15534657 ~ 15536850 (+) True tsen15
XM_039816217.1 mRNA downstream 68327 15546789 ~ 15548920 (+) True sec22ba
XM_039814631.1 mRNA downstream 76009 15554471 ~ 15567869 (+) True slc35a3b
TU154847 other upstream 315503 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1176709 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 1177434 14287150 ~ 14295268 (+) False LOC120568245
TU155036 other downstream 42337 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 243677 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 244045 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 244673 15723135 ~ 15723203 (+) True LOC120569144
XR_005640847.1 other downstream 245267 15723729 ~ 15723797 (+) True LOC120569145

Expression Profile