RNA id: XM_039815637.1


Basic Information

Item Value
RNA id XM_039815637.1
length 4736
RNA type mRNA
GC content 0.42
exon number 4
gene id zgc:153115
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15520782 ~ 15528769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGGGGGCGTAGGTTTGACCGGCTTCGCGGAGGCTCAGACACAATGAACCGTCAGATGGTGAGGGGTACGCATGGTAAGCCGAAAGTATTAGCACGGTTTTagaacattatttttctcatctgTGCCTTTTCTTTGATGAATTTAATCAATTTCAAAATACTGATACGCTATATGGCGGTAACAAGGCTCAGCTGGAAACGGTTGGTTCGTCGAGTTTGGTGAAAACGAGGTCAGGCTCAGACTACCGTTAAGTTAGCCCCTCCTGGCGGATTTTGTTTCGTTATTTTTTCTAGATAAAGACCACAAAACAAGGCAGATAACAATGTCGTTGACTGCTTCGTCTGATTACTTCGCTGCCGAGTGTCTGGTGTCGATATCCAGCGGTCCTGTCCTGCACAGACCCACCCCAGTCGCCCCTGCCACCCAGTCGGCCACGGTGGGCCCTCCCGGAGACCCCGACGGGTCGAGTGAGGACAGGGAAGTGCGGGAGACACTGAGGCTGGAGGGGGCGAACATGATGGCGGTGGCCGGTATCCTCACCGACCTGCACGGCAAGTTCCGCCCCATGTCGGCCTACTCTGAGAGCAGCAACTCCTCGTGTGGTGGGGAGAGCGGTTACACCACGTTGTCCGACCCGACCACCCCTACCATGACGCCCTCCGCCACCCCGGTCCCCGGACAACAGCAGctgagggggggaggagggggcgTGGGGGCCCCGCGGTCCCCGGTGAAGCGACATCAGTGCACTTTTGACGGTTGCGACAGAGTTTACGGGAAATCGTCCCACCTGAAGGCACACATCcggacacacacagGTGAAAGGCCCTTCCCATGCACCTGGCCTGACTGTGAGAAGAAGTTTGCCCGCTCTGATGAGCTCGCCCGCCACACCCGCACCCACACAGGGGAAAAGCGCTTCCTGTGTCCACTGTGCGATAAGCGCTTCATGCGCAGCGACCACCTGATCAAGCACGCCCGCCGCCATCCTGACTTCCAGCCCTCAATGTTGGGCCGCTACAAGGGCACGTCCACCACTCCCAGTCCAGCCGTGCACCATTAGGATGGTTTGGGTTGGGGGGGTTTCCTGGCAGGAGCACAGAAGGTCACAGTGGTTTCAAGTTAACCAGCTACAGTCAGAGCCACTGATTAGGATTTAGCATTGCTGTGTTGTACTCCAAAATGTGCACAtaataacacatacatacatacaacacaatCCGCACAGAGTTGGCTGTGAGGGGGGGGAGCAGCTTCATCCCTCCATCAACACAGATGAGTCGTGACCACTATCCACCTACTCGACATAACTAGGGTTGGTAGAACACTCCAAATCTATAAGTGGGGATTCGTTAAGAAATGTGCTTTTCGATTCCATTTATCGTTTCCTGAAAGCAAAGTTTGGACCTACTGCACTTCATTTACATTGCCGGTTACACATGTATCGAAGTATGTGTATAATGTTTACAATATGACGGACTGGAGCTAGCTTTCACAAGTTTAGCTATGCTTCACAGAAGACAGTAATGATGCAGTGAAATGTAATCACtgcatgaaaataaatacatgcaagGAAAGAAAATCAGTCTAATGTGACAACACACTTCAGAATGTAAaagaatgcatttttttaatgtcCTGTATCATGACATAGTGCCATTAAATGACACTTTTTATAGATCAAATAACCAGATAGGATTGTCTGTTTTTGGTTAATCCACTCAATTAAATACAGGGCTAATCAAGGTACTTCATCACATTGATGCAAGATTCTGTAAAACAATTATGTCATAAAATAGACCCAGCCTTTAATGCTTTTGAAAGCATAATCAAATgtaaaaccattcaactttaaCATAGCACAAGAgagaatatttatttttcttttgtttttaatcccCAAAAAATTCTTCGACGCAGCCTAaagcttaaataaataaatgttttttactttaaacatactttggtttctttttttttactcaggatTCGATTAGAATGGGAATCGTTAAGCAGATTTGAATGGATAAAATGAACCCAACCCTAAACAATAACCTCATTTTCTCAGACACTTTCACAAATTGCAGggatttttcacattttctgtAAAAATCTGCACATTCGTCATCAGCCAAAACTCTGGTTTCTTGTGGTTAATTTGTAGATTGTTGTTGTGCTCTTCAGTACCATTTATTTACCATAAGTAGCACAAAATTGTGATGTTTGGTAGCGAGGCAGTGACTAGAAGccttttaagcttttttttttttttttatagctttgCTGACTCCATATAAGTTTTAGTGGTGACACATTCCTTCATTTTTATTGCATTGGTAACCATCATTGAGGTGATTTTGTAATGTTTTCTTTATATCCAGTTTAACTATATATCAAATATTGATTTTGCCAGTAAGTGGATCAAGCTTCACTGTAGAAGAGCTGTTTGCACACCATCCTTAAGTCTAGATCAGTTATCCCCCATAAATGCTgacacataatacacagtacTCGTATTATGTCTAATACTGATGCAAATGTATAGAAGCTTTTAATGTAGATAAATGGTAATGCTACTAGCTGCAGAATTAATAAATGTCATGAATTTTAGTCCTTATATTAGGGGTAACAGTATATTCTTGATAGGTTAGCATTGCCTATAAGTGtcggtgtgtatgtgtttttatttacatttttgttagcGACAGAACTGGGGAAAGTATGcgatataaaaatattttgagaggtaaaaaaaagatggcATGAGATGAGCTTGACTTTCAGCCTGTTGCCTTCAAAGTAAAAGCGTTCATCCCACTCATCGGGGGGGGTGGAGCCATACGGCAGAGCGCATTTCAGGATCAGGTGTGCCAGGTGTTTCTGTAGACGGTTTGACTTTCAGCAGCAGATAAACCAGGTCTCTAACATGTAGTGTTGAAAAGAAAatccgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggaattgGTCTAAAAACAACTGCTACTACTCTGCTCCCATTCAGGAAAGCTTTAGACCTTTATTGAGGTgcacattttgacttgtcaaagCAGCAACAGCACAGGTGCAAGTTGAGTTAAAGATGGCTATTTTCTATGAGGTTGGTGTCATTGAACCAGCAGGCACTTGTAAATGTTATTTGTTACACTTGTGtttgacaagtcaacatgtccaCTGGTAAAGAAACAATACTATGTACAAATGTGGATTTGTTAAGAACCTGTTATGTCAATGGGCACCTAAATATTCCTATATGCCAAAATAAGTGAATAATCCCCATGCATTTCAGGAAAAATATACATGAGGAAGCCTCGAgtaatttagatatttcaaaTCTATTTGAGTACATACAGTATCCAGGTCTGATAATAGAGGtagaatctttttttattttttatttttaatgtttccaCACTGTTTGTCCAGCTCATGGACATATTCTTTATCTCAGTGAACAACACTTAAAGCCTTAAACTATGTCATATCTACTTTGCACCATGTTTACAGTTGGATCATTGTATAGGTATATGTGCCCTCCTGTGGGCTCATCACAGATACTCCTCATGCAATATGGCACTTTTTTCTTACAGGTGTATATGGCTGAATAGTGTAATGGCTTGCACTGTATATGCTTCTACAAGCAAGCACTGTGGAACTTGTTGATAACCAGTGGTTTGTAATACTGCCTTTTTGTCCAAGTGCTTTAGAAAGCGTGATACAAGAAGTGGGTAGTTttgtttctgttcttttttttttttttaagtgtttgctTAGTCATCCAGACCCTTTCTTGTTGTAGAATTTGTATTTTTGGAACACGCTTCATTGGTGATTCCACATCTGTCGACTTTGTCTTCTTCACACTAAGATTACAGATGTCTTCCTTATACATATGTCAAACCATCTATGTACCAATTCACTGTTGATCTCATTTCCATGGGAGCTGCACTCATTAATGCAATGCTTTGAAGTTTTTTACACATTCCTTCTACAGAAGTTCGATCTGTTGACAGTTTGGTTTCTGCTGGCAGTAACCACAAACACATGGACTGTTTAACAAAggaacacacacaatatacttGTATTTTATGTCTATAAATGGAACCATTTACTTACCTCTCACTGATGGGAGTGGCCTCTCACACTGACTCTGTCCGGGTCTCAAAGCTATAATATCACAATAAGAACATACCTAACTGATTTTGTCTTTTATCGGTGTCTTTCCAAAATCCATCCAACCTGTCTTTCAGAAAGTCCCATAAAGCCATCCAGCCTTGGATTTCAGAAATTAGTTATCAGCTAGATGACCTGTTATGTACCCTTGTCCTTATCTTGTCTTTATATGCAACATCACTACTACCTGTGTAGCAGCAGAATTTCCTTTTCCATGCCTCAATGATCTTCTGTTGTTAATAGACCGTAGCAAATGAATCTCTGGGATAAATCCAGGCTCTGTCATTAAAGCCCAGCAGGAGTGAAGAGAGACTCACTGCTGCCTCAGGCAGAGGCTTAAAAGGGGtattaaaatgtaaagaaaaatgaCCTGTAGACTGTCACTTCACTGCAGATTTCAATTAAAAGAGCTCAGTCCAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155002 lncRNA upstream 65407 15444478 ~ 15455375 (+) True G114909
TU154995 lncRNA upstream 83029 15436104 ~ 15437753 (+) True G114905
TU154994 lncRNA upstream 87838 15432671 ~ 15432944 (+) True G114904
TU154979 lncRNA upstream 102734 15416732 ~ 15418048 (+) True G114889
TU154948 lncRNA upstream 152009 15366957 ~ 15368773 (+) False LOC120568540
TU155048 lncRNA downstream 20687 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA downstream 20864 15549306 ~ 15549920 (+) False G114944
TU155054 lncRNA downstream 37952 15566394 ~ 15568494 (+) False slc35a3b
TU155105 lncRNA downstream 96660 15625102 ~ 15625323 (+) True G114991
TU155115 lncRNA downstream 148651 15677093 ~ 15677343 (+) True G114998
XM_039815636.1 mRNA upstream 37013 15480028 ~ 15483769 (+) True LOC120568251
XM_039814715.1 mRNA upstream 42320 15472702 ~ 15478462 (+) True asip2b
XM_039816196.1 mRNA upstream 89008 15421740 ~ 15431774 (+) True ccdc39
XM_039816566.1 mRNA upstream 99624 15418264 ~ 15421158 (+) True dcun1d1
XM_039816671.1 mRNA upstream 138452 15375813 ~ 15382330 (+) True b3gnt5b
XM_039816218.1 mRNA downstream 6215 15534657 ~ 15536850 (+) True tsen15
XM_039816217.1 mRNA downstream 18347 15546789 ~ 15548920 (+) True sec22ba
XM_039814631.1 mRNA downstream 26029 15554471 ~ 15567869 (+) True slc35a3b
XM_039815274.1 mRNA downstream 44809 15573251 ~ 15579524 (+) True cmpk
XM_039816260.1 mRNA downstream 93612 15622054 ~ 15624462 (+) True zgc:153913
TU155017 other upstream 42438 15472743 ~ 15478344 (+) False asip2b
TU154847 other upstream 363583 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1224789 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other upstream 1225514 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 1229822 14288355 ~ 14290960 (+) False LOC120568245
XR_005640849.1 other downstream 193697 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 194065 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 194693 15723135 ~ 15723203 (+) True LOC120569144
XR_005640847.1 other downstream 195287 15723729 ~ 15723797 (+) True LOC120569145
TU155130 other downstream 236256 15764698 ~ 15800493 (+) False st6galnac3

Expression Profile