RNA id: TU155176


Basic Information

Item Value
RNA id TU155176
length 1464
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G115048
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15741824 ~ 15745228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tTGAGGGGGAAATCATACATTTATTGCCAATCAAAGATTACAAATAAGTTACATTAATATACacacactgaaagaaaaaaaaagttttaaccAAATTAGTACACAtaaaaagacacatcaaagccTAAGACTTGAAATTTTCTCAATTTTGCACACAGTTTGGGTGCAAATCTAAACCCTCTGTCCACAGCTGCATAACAAAGCTGTGATGAGTAACATGGATTTAAATAAATAGTGTAGCTGAGACTGAGGATTGGCAAGAGACAACGACCATGTGTTTTACCTCTTGGTGTCAAACAAAAACACTGCCCCATGCTCCAATTcatgcaaaaacattttctttactgTAAATTGAAGTTATTTTAATGAAACTATCTTTTGTTTGCAACAAGTCATGTGTCGCATGTCCAGTTGTGAGACCTATTAACCCGGTAGTAGAATGATTGGTCAAGTTTATAACAGGACGAGGATACTTTGCCCTTTACATGCTGTCACTTTTCAAACACGGAAgttatttcatttaaaacagtaaGTGCATAAAAAAAGGCAGAACTCTCCAACAACAAAGCAGTCAAGTGTCttaagccccaaaaacaaaattaaatcaCAGAGCAAACGTTCTCATTCTTGTCTGTTCCACACAATCTGTTTCAGATGCACAAATCTGTCAAATTAAATTGAATATTCCTTTATCATTCAGGTAAAGTACATGAAAAAAAGCTTCCTCACAGGGTGATGGGAGCAAGAAAGATGTAAAAAACTGACTTCCACAACAGTTTGTCCCATGTTTTCCATCAGACAAACCGACATGGTGAGTAAGTCAACATGCTAAGGAATGTTGCTCAATGATTTCTGGGCTTTAGCAACGACGATCACACTTCAAAGCATCTCTTTCCCAAACTCTTCTCTTGCAGtaaaatcaacaaaagtacCTTGATAACATAATGGTTGAGGGTGTAAAGACAGACTCAGAGGAATCGAGTCAGAACTGCGCAACTCTTTTTGTCCTTAGTGAGCATAGACTGAAACCTGCATCTAAAATGTGTCTGTAGACTTCAGCTAACACTACGATGTGTGGTGGTCCTCTCTTTGCTCCCGACACACAGCCATGGTAGTTGGGTTGTTAAGCagggcaggtgtgtgtgagtgtggtggGATGATGGTGTCAGAAGGCTAGCTGAGGAGGTCAGGCTGCAGGTTGATCCTCTGCAGGACATCCTCAGGCATGCACAGAACAGGATTCACTGGCTTGATCTGTTCATCTCCGAGAAGGGAGAGACCTGCAACTCCGAACAGAGTGTGGAAAGGATCCACATGTCTCCCGGTCTGTCAGCAAAACCTCCAGTCTCCTCGTCTTGACAGGCCAGTATAAACGATCGCAGCTTGGCCTTGTCGATCCAGTGGATCCGACCAATGATTTTCAGCGATGCCAAAACCCACCACGAGTAGCACACATCTGGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155171 lncRNA downstream 4997 15736529 ~ 15736827 (-) True G115043
TU155170 lncRNA downstream 5929 15735480 ~ 15735895 (-) True G115042
TU155169 lncRNA downstream 6543 15735054 ~ 15735281 (-) True G115041
TU155136 lncRNA downstream 14595 15721019 ~ 15727229 (-) True G115017
TU154969 lncRNA downstream 334197 15407377 ~ 15407627 (-) True G114883
TU155182 lncRNA upstream 97522 15842750 ~ 15843093 (-) True G115054
TU155184 lncRNA upstream 97931 15843159 ~ 15846609 (-) True G115056
TU155189 lncRNA upstream 173093 15918321 ~ 15920985 (-) False G115060
TU155190 lncRNA upstream 173093 15918321 ~ 15921531 (-) True G115060
TU155193 lncRNA upstream 176976 15922204 ~ 15922456 (-) True G115061
XM_039816257.1 mRNA downstream 121165 15616397 ~ 15620659 (-) True cldn1
XM_039815271.1 mRNA downstream 153940 15581618 ~ 15587884 (-) False bcl6ab
XM_039815272.1 mRNA downstream 154117 15580776 ~ 15587707 (-) True bcl6ab
XM_039815273.1 mRNA downstream 168684 15568830 ~ 15573140 (-) True fam78ba
XM_039816860.1 mRNA downstream 187855 15549860 ~ 15553969 (-) True imp3
XM_039815030.1 mRNA upstream 178474 15923702 ~ 15954239 (-) True pigk
XM_039815031.1 mRNA upstream 200482 15945710 ~ 15954239 (-) False pigk
XM_039815825.1 mRNA upstream 288054 16033282 ~ 16054068 (-) False zzz3
XM_039815826.1 mRNA upstream 288054 16033282 ~ 16053700 (-) True zzz3
XM_039816384.1 mRNA upstream 309031 16054259 ~ 16077214 (-) False usp33
XR_005640845.1 other downstream 328765 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 329357 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 329984 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 330477 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 437214 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 398932 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 437426 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 437426 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 437426 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 585725 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile