RNA id: TU155189



Basic Information


Item Value
RNA id TU155189
length 2665
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G115060
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15918321 ~ 15921531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acacacacacacacacacacacacacacacacacacacctgtctgagAATAACTAATTATAGCCTAATTAATGTTAATGCATAAAAGACAAATGTGGGATTACTATTCTTATATCATGAGCTATTTGGGATTTTTGGGGTAATGCatatatgataataataaaataaaaaaatcgaaGGGTTAGAATACTGATTTGGACGTTGATTACCATGGATCAGCCCTAGAATTTAAGGTTGGAGCTTATTATTACACAGTCTATGGGCTGGAGttagcagctggttagcttagtttagcatacaGGATGagaggaaacagaaacacagcTAGCCCTTGCCTGTCAATAGGTAGctaaatccacctaccagcaccttttCAAGCCCACCAGTTAATACATTATATCTTATTAGTTTTTGTAGAAATACAACTTATGCTTTTTAGTGTAATGCTGTAATTTTAGTTATGGGGCTTATGTGACAGAACAAGTCTTGGCTGGGACCAGGAGCTTCCTGGAATCAAGAAACAGTCCAGCAGAGCCCACATAACTCCCAGTAAAACAGCAAATTACATTCCGGTTTTCACAGCTAACAACTAGCTAGCCAGACAGAAAGGGTATAATCATATTTCTAATAAAGTCAAGCTATTCCTTTAAGTTATTCATGAAGCGGACAATTCACATATTCCACTGGTTTCGgcttgtccaaaaaaaaaaaaaaaagattgctgCTTTTCTGTTCTATATAATACCAATTGAATAgctttaggttttggactgttatGTATAAAACAAGCAATCTAaaaatgtcatcttgggctCGGGGAACTTGTGATGTacatatttctatttttatagaccaaacaatataaaatgaaaatagttgCAGCCCCAAACGACATACTGTGACTAAttagattaattgattaattaggCAAAAAATATTCAAGTGAAAACAAAGGCATTAGTCTTTGCTACAGCACAAAGTCGGCAGCAGGACTCTCAGTACAGCAGCAGCACCCCTGCAGCTGTTTGTGATGTATGAAAAGTAATCATGTCCTTGTCGCTACCGAGGAAACGTGTTGTGAAACACGTCCTTGTGTGAGCACCTATGTATCTGACCAACATCATCCCTCCTCTCATTACTCACATTACAGAGATGAGGGTAAAATCAATAGGGACTTAGCACCAGGATGTATCATTAAGATAACCACATGTCTCATCACTTTCTCCAGACCAACACCTCATTCTTATTCATagaggagggaagaggggaAAATAGAGGATCTCAAAGAGAGGAAGGGGCAGTCTACAAGCAGCATATACTTCATCAAATGAGAGCAGAGTGTACATAAAACAAAATCCAGACCGAGAGAGGAAAAGACTGACAGATCACATACTCATCAGTTTAACAGAAAAACTGTGTAATTCTTCTGCGAGGCGATTCGGGCAgcagatatatactgtatagtagGATGGATGGCGCTGCTGCATCCCTGCTTTCGATTTTAATCTCCCACTTGTCTTGTGTGACATGGCTGTGCATTTACATGGAAATCCGGCTTGTAGCTATATAAATCGCGCTATTAAGTGGTGACAGGAGCCGACAAAGCCTTTTGATACATACGTACGGGCTGAGGCGGTACACACGCATTAGATGAAACCTCTCAGTTAATGTTACACACTTGTCACTCAGCCAGGAAGTACTGCATTGCAAAATTTGACTTGGGTGAGCTTACAATGCACATATCTGAAAGACAGTAAAAATGAAAGTCAGGGAAGTGATTCATATCTGCTTTTGTTGCTCGAGACAGGGGTGAAGCTCATCCAACTTGACCTCCTCAGTCTTTGAAAAACGCAGACGAATATGAATCTGAACAGTGACGATTCACACTTCAAATAGCCAATACATTGTTAGATTACGGGCATTGTAATGGTATTTTTCTTTCAGTAAACTAAGTGGTGAATCCTGCATAGATCCTTCATCCAGCAGAGGCTTTGTGGAGAGCCCAAACTCAATGTTTGTATCCTCTGTGATCCctcaggtaaacacacacacacacacacacacacacacacacacacacacaatccacagTAAGACACAGCATGCATGCATTGCGAGTGGAGTGTGTAATGATGTGATGCCTCCTTGTATAAACTCACTTTACAAGTTGTACAAGGGATGTACAAAGTTTGATCTGGTTCACCTCAGTAAACAGAACACACTGCTGGAGAAGCAGTGGTGAAGCTGGAGAAATGTTCATAACAAATGTCAACAAGACTCACAGTTTATCCGTGGTAACTATTTTTCTTGCCTACTACACATTTTATTCTTCTGTTAGGGGTCCAGCAGTCCTTAGTGCAAATGTCCCCCATCCTCACTCTTTCTTAGATGAATCTCTAAAGCATTTTCTTCACCCCAACACAGGTCACGTCTTCTGGGGTACCAGGGGCGCCGCTGTGACCGTCCCCTCCAGCGTGTGGTTGGCTGGGAGAGGTGGAGGGCTCCAGTCCGGCTGGTAGAAGTGGATGTCAAAAGTCCGTGCCCATTTAGCGAAGACCCGCTTCTCTGTGATGAAGCGGTGGTGGCTTCCCCGCCGCCCACGCTCATGAGAAATGTACATGGCACACTCATCTGGACCACGTGGCTCGTAGTAGTGGTAAGGGACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155184 lncRNA downstream 71712 15843159 ~ 15846609 (-) True G115056
TU155182 lncRNA downstream 75228 15842750 ~ 15843093 (-) True G115054
TU155176 lncRNA downstream 173093 15741824 ~ 15745228 (-) True G115048
TU155171 lncRNA downstream 181494 15736529 ~ 15736827 (-) True G115043
TU155170 lncRNA downstream 182426 15735480 ~ 15735895 (-) True G115042
TU155193 lncRNA upstream 1219 15922204 ~ 15922456 (-) True G115061
TU155207 lncRNA upstream 110947 16031932 ~ 16032227 (-) True G115075
TU155339 lncRNA upstream 250488 16171473 ~ 16171811 (-) True G115175
TU155347 lncRNA upstream 253276 16174261 ~ 16174553 (-) True G115178
TU155348 lncRNA upstream 254373 16175358 ~ 16175706 (-) True G115179
XM_039816257.1 mRNA downstream 297662 15616397 ~ 15620659 (-) True cldn1
XM_039815271.1 mRNA downstream 330437 15581618 ~ 15587884 (-) False bcl6ab
XM_039815272.1 mRNA downstream 330614 15580776 ~ 15587707 (-) True bcl6ab
XM_039815273.1 mRNA downstream 345181 15568830 ~ 15573140 (-) True fam78ba
XM_039816860.1 mRNA downstream 364352 15549860 ~ 15553969 (-) True imp3
XM_039815030.1 mRNA upstream 2717 15923702 ~ 15954239 (-) True pigk
XM_039815031.1 mRNA upstream 24725 15945710 ~ 15954239 (-) False pigk
XM_039815825.1 mRNA upstream 112297 16033282 ~ 16054068 (-) False zzz3
XM_039815826.1 mRNA upstream 112297 16033282 ~ 16053700 (-) True zzz3
XM_039816384.1 mRNA upstream 133274 16054259 ~ 16077214 (-) False usp33
XR_005640845.1 other downstream 505262 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 505854 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 506481 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 506974 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 613711 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 223175 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 261669 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 261669 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 261669 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 409968 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile