RNA id: TU155369


Basic Information

Item Value
RNA id TU155369
length 595
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G115192
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16221788 ~ 16222434 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCCCATCAGTATTCACTCGGTAACCGAAGGCGATCTGCTCGTAGCTCCCAGCAATCAGCTCCAGTACAGCTGCCATGCTGCCACTTGTTGCTACAGAGTGCTAAGCTAGAAAGGTTAGCTTTCATTAAACGTCAGCTTTTTCTGTCGTCCCGTTTGACCAACAGCTAATTACAGATACTAACAGTCAAATCAGAAACGTACATGTGAAACACTGAGACAATAAACGACGTAAACAGCGTGGTGAAGCTATTTAAACATGACTATCTATTAGCTATTTTTGCCAAACCCATATCAAAACAACGTGTGCGGCTGTTGCGCTTGCGCAAAAGTCATCTTCCTTCCTTCTGGTagtggttttcaaaataaaagcaggtGTTGTGTTGTGAATACGATTGAGTTTGACACCGCACTGGCACCGTGCacttttatatactgtctatgaccGTGCACCGTTGTGTTGCGGTTTCCGCGTTGAACGGTCAAAACTGGAGAGACAGCTAGCTCAAATAGTGGCATCGGCAGCTCGCAGTGGCATTTCCGGTGGTAGGTTGAGATGCCACGGCATCTGCCTCGGTTAGCAGTGGCATTTAAG

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG:

id description
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155366 lncRNA downstream 1678 16219894 ~ 16220110 (-) True G115191
TU155343 lncRNA downstream 39342 16178079 ~ 16182446 (-) True G115176
TU155349 lncRNA downstream 44578 16175965 ~ 16177210 (-) True G115180
TU155348 lncRNA downstream 46082 16175358 ~ 16175706 (-) True G115179
TU155347 lncRNA downstream 47235 16174261 ~ 16174553 (-) True G115178
TU155377 lncRNA upstream 21358 16243792 ~ 16245893 (-) True G115200
TU155439 lncRNA upstream 94217 16316651 ~ 16316972 (-) True G115240
TU155431 lncRNA upstream 94987 16317421 ~ 16319970 (-) False mppe1
TU155482 lncRNA upstream 286143 16508577 ~ 16512895 (-) True G115278
TU155520 lncRNA upstream 321179 16543613 ~ 16558198 (-) True G115309
XM_039814529.1 mRNA downstream 12811 16202077 ~ 16208977 (-) True LOC120567616
XM_039815024.1 mRNA downstream 20531 16182654 ~ 16201257 (-) False cc2d1b
XM_039815026.1 mRNA downstream 20531 16182654 ~ 16201257 (-) False cc2d1b
XM_039816248.1 mRNA downstream 78102 16137864 ~ 16143686 (-) True txndc12
XM_039816244.1 mRNA downstream 110355 16104772 ~ 16111433 (-) False slc25a24l
XM_039815485.1 mRNA upstream 5504 16227938 ~ 16242697 (-) True LOC120568161
XM_039815487.1 mRNA upstream 5504 16227938 ~ 16242697 (-) False LOC120568161
XM_039815486.1 mRNA upstream 5504 16227938 ~ 16242560 (-) False LOC120568161
XM_039815488.1 mRNA upstream 5504 16227938 ~ 16242560 (-) False LOC120568161
XM_039815484.1 mRNA upstream 5504 16227938 ~ 16242560 (-) False LOC120568161
XR_005640638.1 other downstream 20090 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other downstream 20531 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other downstream 20531 16182654 ~ 16201257 (-) False cc2d1b
TU155326 other downstream 73667 16144160 ~ 16148121 (-) True G115164
XR_005640845.1 other downstream 808729 15412986 ~ 15413059 (-) True LOC120569143
TU155443 other upstream 108519 16330953 ~ 16335932 (-) True LOC120568735
TU155525 other upstream 414674 16637108 ~ 16639812 (-) True G115312
XR_005640632.1 other upstream 533897 16756331 ~ 16802264 (-) False epb41l3b
TU155670 other upstream 817366 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 817366 17039800 ~ 17108904 (-) False ly97.3

Expression Profile