RNA id: TU155395


Basic Information

Item Value
RNA id TU155395
length 2547
lncRNA type intronic
GC content 0.45
exon number 7
gene id G115207
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16262657 ~ 16268829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACGACTCTAGCGTAGCACATGCGttttctagctagctagctagctacatccaTGAGCACATGCCATAACAGCGGGAGCATTTTCTATGGTGTAAAATCTTGAGGAAATCACCATAACATCTTCTCTAACGAAAACTACACAATCAAACATTTTCCAGCAGGAATCCTATCCGAAGTCGAGAAACATTAACAGCGGCATCCAAGATTCCAGGTGTAATGGCTCCGgAGCAGTACACAAGCTCCAAGATGCCGACAGGGGCTGGGGGAAGTGTCATCCAGTCAATCCCAAAGAAGTCTCCCTCAATCTTCCAACCATGGGCCATTGGTGGTGGAACATCAGGCTGACTCTTCAGGGACCTTCTGTATATGGCTGCCTGGTAATTTGCCCGCTGGGTGTGGTTATGCAAGGCATCCCTGTTTGGTggtagacttctgtctgtgcACTTTCCACTCTTGAACAGCTGAGACCTTGCATAATTGACATCCCTACAGTCTTTAAGGTCATAGAGTGCACAGGTAAAAGCTTCTGTAGCTTCATACAGCTCTGCTGGCAGTTGAAAAGCTGTTCCCAACCTACTCATTGTGGCACAATGGTCTTCGTTTGAAAGCAGTGTTTTAATTGCCTTCACTTTACCAACGCCATACAGAGCACTTACTGTATCACATCCAGTGAAACAGTGAAGTCCAATCAGAGCATCTGTTATTTTATCACCTAGGTGGCTCTGTATTTGCTGTACATGTATGGTGCGTTTGTTTTCTCCTTTACCTGTGTGAAAGTAGACGTTTGCTCCAATTTCcttgcagaaagaaatggcCAATACAAACACATCAGTGTCAGGACTGTTGATCACaatatttgtactgtactgTGAGGCATGCGCACAGTGAAGCAACAGCCGAGTGTCTGCCTCCTCCTGTATTGTAGACAATGCTGGCAGTGGTAACACCTCAAGGTCTGTGCCACTGTTGTTTATTCTGATTATGTGACACTCAGAGCCATGTCCAACTACCAATGTAATGTCCTCAATTTGATCTAGCCTAGACTTAGACCACGACTCAAAGAAAAACTGTTGCAGTTGCTCCTTGTTGTCACCACAAGACAAGAACTTGGACCATTGTTTCGGTGTTTTCTGGTCAGCCGAATATATTTTAGTCACCTGACATCCTTTTGTAGCTCGTCTGTCTCGTTCCGCGTTCTTTATGCTCATCTGTTTGTAGGTATCAGGGACAAAATGCACAACTTTTGATTTACTTGCTTTGGCTGCATTGATCAGGTACATAAGTACATTGTTGGCAAATCTTCCAAATGTATTTTGGGGTTTCATGGCTTGTACCAGTGCCATTGCATCACACACCCAGGTTGAGCCATCAGGGATTTCAActgtggctggtggatttacTGACCCTTCTAGAAAGTGCATTaatttggctttgtctgtttttacaATCGAGCCATCAATGTTTGCAATTGCTGCAGGCAAGGGCCCCAGACTATAGACCAGCATTTCCCCTATGTCTATCTTCCTCACTGTTCCGACCACAATAAGCCTTGCGAAGAGATCTCTATCTGCTTTTAGGGCTATCTCCCGGCCTCTCACTTTGGTGACACTTGAGGTAGCTGTGTCCTTAAATGTCTTTAGTTTCATTTTCTTCAGTGGTGCATGAAATTCAACCTCATCTGTGTTGAGACGTTGCTGAAAGAATTCAACAAATGCCTTCTCACCTATTTCTTTTGCATTCAGCAGATCTGCAGAGATGGCTTCTGATGCTACCTGACCTGATGTAACATGCCATGTCCTTGACCTCCATTGTGATGGCTGCCTCTCGTGCTGTGTCAGTGTCCACCTGTGGACTGCACCTTTGTTCAACGAAAAACCTGAAAAGAACCATGGCAGCATGAACCGGATGCTGGAAAGATGCAGACCCCAGTTTGCCTCTCGTGTGGCCCTCACAAATGATAGCAGATCCTCTACCATTTCAATGTAGGAACTCCAAAACTGGAAAGGCACTTTGGAGGTCAGCAGCAACTTTTAAAGCAGCTTCACGGCAGTCTTGAGAAAGGGTTTCAAGACCCAGCAGCAATAACGTCAGCCTCAATCAGAATGTCTTGTAAGCCAGCATCTCCAAATCGCGCGCCAATACAGGACAGGAAAGCCATACATGTGTGAAACTCCCCCATTCTAATTGTAATCCCAGATCCTCAGCCCTGCTGTGAGATATCTTCTTGACCTGATCTGACTAAACCCTGACACATCTATTCTGCTGAAACAATGAAAATGCTCTTTGTTTTTCACGGTTCATCATAAAACCCTTTTAATGTTTTGCTCAACTGTTTGGTGGCGTGCATTTTCAGTCGctatatgttgaaaaatttgTCCACTAGATGTCGCTGTGTCTATAGTAGCCTTTTTATTAGTTTACCTTGACTAAAATGTCAATTAAGACACAGGGCTCTGTCTGGCCCTTCTCTTATTACATTCATGGTCTGGCCTGGCAAGGTTTACATGGGCagggtttgttttttgtgtgcatagtTTCGCCGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155286 lncRNA upstream 13010 16242987 ~ 16249647 (+) True G115136
TU155277 lncRNA upstream 30181 16231698 ~ 16232476 (+) True G115128
TU155273 lncRNA upstream 43214 16219182 ~ 16219443 (+) True G115124
TU155272 lncRNA upstream 44963 16217462 ~ 16217694 (+) True G115123
XR_005640815.1 lncRNA upstream 46292 16212994 ~ 16216365 (+) False LOC120568989
TU155397 lncRNA downstream 20408 16289237 ~ 16378519 (+) True G115208
TU155419 lncRNA downstream 161332 16430161 ~ 16431655 (+) True G115223
TU155504 lncRNA downstream 337874 16606703 ~ 16608542 (+) True G115295
TU155499 lncRNA downstream 341815 16610644 ~ 16612206 (+) False LOC120568363
TU155501 lncRNA downstream 341815 16610644 ~ 16612161 (+) False LOC120568363
XM_039815492.1 mRNA upstream 34106 16226320 ~ 16228551 (+) True LOC120568164
XM_039815491.1 mRNA upstream 34106 16226320 ~ 16228551 (+) False LOC120568164
XM_039815490.1 mRNA upstream 36565 16222043 ~ 16226092 (+) True pak1ip1
XM_039815022.1 mRNA upstream 81803 16151205 ~ 16180854 (+) True zfyve9a
XM_039815710.1 mRNA downstream 3035 16271864 ~ 16313801 (+) True LOC120568300
XM_039815932.1 mRNA downstream 75819 16344648 ~ 16427873 (+) False LOC120568416
XM_039815931.1 mRNA downstream 76379 16345208 ~ 16429396 (+) True LOC120568416
XM_039815942.1 mRNA downstream 168752 16437581 ~ 16446542 (+) True rab12
XM_039815937.1 mRNA downstream 170196 16439025 ~ 16526485 (+) False LOC120568419
TU155276 other upstream 34135 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 462164 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 538860 15723729 ~ 15723797 (+) True LOC120569145
XR_005640846.1 other upstream 539454 15723135 ~ 15723203 (+) True LOC120569144
XR_005640848.1 other upstream 540084 15722507 ~ 15722573 (+) True LOC120569146
XR_005640725.1 other downstream 170196 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other downstream 170196 16439025 ~ 16526428 (+) False LOC120568419
TU155758 other downstream 1138662 17407491 ~ 17440463 (+) False LOC120568596
TU155940 other downstream 1758451 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 2036320 18305149 ~ 18354344 (+) True G115729

Expression Profile