RNA id: XM_039816418.1


Basic Information

Item Value
RNA id XM_039816418.1
length 970
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120568735
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16330952 ~ 16335956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCGTGTCTGCGTCACACGAAGGAGGGGATCCAACATGGCGTCTTCAATAACTGTACCGCTACTGTTTTGTTTAGcatcattttcttttcaaatcaGCTCCTCCAGACTTTTATCTGAGCCTTGTTACAAACCAATCAAAGACGGCAGACCAGACTCTGTCAAGACACAGGCCCGCCCACATGAGTATGTGAAGgtgtcagaccttcctctgtCCTGGGACTGGAGGAACATCAAGGGGAAGAATTATGTGAGCGTCACCCGGAACCAGCACATCCCCCAGTACTGTGGGTCCTGCTGGGCCATGGGAGCTACCAGTGCACTTGCTGACCGTATCAACATCAAGCGTGGAGGAGTGTGGCCGTCGGCTTATCTGTCAGTCCAAAACGTGATAGACTGTGGGAGAGCGGGCTCTTGTTACGGAGGAGATCACCTGAGAGTCTACGCCTATGCACACGAGAGAGGCATTCCTGATGAAACCTGCAACAACTACCAAGCCAAAAACCAAAAGTGTGAGCAGTTTAACCAGTGTGGCACCTGCTCCTTTTTTGAATCGTGTGCTGTCGTGAAGAACTACACTATGTGGAAAGTGGGCGACTATGGAGAAGTTTCAGGAAGAGACGAGATAAAAGCAGAATTGTACACCAATGGGCCCATCAGTTGTGCCCTGATGGCCACTGACGGCCTGGAGGGATACTCTGGAGGGATCTTCTCAGAGTTTCACCCCCTGTCTTTGCCGAATCACATTGTCTCTGTGGCTGGCTGGGGTGTGGCGGAGGACGGGACTGAGTACTGGATTGTCAGGAACTCCTGGGGAGAGTTTTGgggagAACACGGCTGGGCAAGAATAGTCACCAGTGCCTATAAAGGAGGAAAAGGCAATTGGTTCAACCTGGGTATTGAGAAAAACTGTGCATATGGAGACCCTGTTGTAACATAGCAGCCTAATTAAACTGATAGAAAGACTCTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155431 lncRNA downstream 10982 16317421 ~ 16319970 (-) False mppe1
TU155439 lncRNA downstream 13980 16316651 ~ 16316972 (-) True G115240
TU155377 lncRNA downstream 85059 16243792 ~ 16245893 (-) True G115200
TU155369 lncRNA downstream 108518 16221788 ~ 16222434 (-) True G115192
TU155366 lncRNA downstream 110842 16219894 ~ 16220110 (-) True G115191
TU155482 lncRNA upstream 172621 16508577 ~ 16512895 (-) True G115278
TU155520 lncRNA upstream 207657 16543613 ~ 16558198 (-) True G115309
TU155522 lncRNA upstream 222312 16558268 ~ 16560473 (-) False G115309
TU155540 lncRNA upstream 277072 16613028 ~ 16614925 (-) True G115323
TU155549 lncRNA upstream 414944 16750900 ~ 16751275 (-) True G115331
XM_039816416.1 mRNA downstream 3526 16317418 ~ 16327426 (-) True mppe1
XM_039815485.1 mRNA downstream 88255 16227938 ~ 16242697 (-) True LOC120568161
XM_039815487.1 mRNA downstream 88255 16227938 ~ 16242697 (-) False LOC120568161
XM_039815486.1 mRNA downstream 88392 16227938 ~ 16242560 (-) False LOC120568161
XM_039815488.1 mRNA downstream 88392 16227938 ~ 16242560 (-) False LOC120568161
XM_039815933.1 mRNA upstream 94186 16430142 ~ 16436241 (-) True napgb
XM_039815831.1 mRNA upstream 205174 16541130 ~ 16562163 (-) True acss2l
XM_039815832.1 mRNA upstream 205174 16541130 ~ 16562040 (-) False acss2l
XM_039816659.1 mRNA upstream 349524 16685480 ~ 16712264 (-) True LOC120568912
XM_039816723.1 mRNA upstream 416037 16751993 ~ 16754766 (-) True LOC120568957
XR_005640638.1 other downstream 129254 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other downstream 129695 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other downstream 129695 16182654 ~ 16201257 (-) False cc2d1b
TU155326 other downstream 182831 16144160 ~ 16148121 (-) True G115164
XR_005640845.1 other downstream 917893 15412986 ~ 15413059 (-) True LOC120569143
TU155525 other upstream 301152 16637108 ~ 16639812 (-) True G115312
XR_005640632.1 other upstream 420375 16756331 ~ 16802264 (-) False epb41l3b
TU155670 other upstream 703844 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 703844 17039800 ~ 17108904 (-) False ly97.3
TU155672 other upstream 707170 17043126 ~ 17045062 (-) True G115406

Expression Profile