RNA id: TU155501


Basic Information

Item Value
RNA id TU155501
length 1329
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC120568363
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16610376 ~ 16612206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAAATGCAGTATGTTTAATaagttgttgtgtgtttggttCACAGAGTGATGATGGCAAAACGTCAGTGAGAGACCGATTCAACGCCAGGCAGTTCATGTCCTGGCTACAAGATGTTGATGACAAGTTTGACAAACTGAAGACGTGTCTTCTGATGAGGCAGCAGCATGAGGCGGCGGCCCTGAATGCTGTGCAGCGTCTGGAGTGGCAGCTCAAGCTGCAGGAGTTGGACCTGGCCACTTACAAGTCCACCAGCATCTTCGAGATCCCCGAATTTTACATCCCACTCGTGGAGGTCAACGACGACTTTGACCTTACCCCGATATGAGTTGTTGAACAGACGGGCTTTGCCACAGCGGTGGCCAAATCACGGACACGAGAGGCAACCCGCACATtcgaggaaaaagaaagaaaaatgtgaaGCACTTGTGGCGGTAATACAAAAAGAGCATTTATTAAAGAGACAATTTTACTCCAGCGCTCTTACAGTCCAAACCAGCACGCCCACCAGGAGGACGGGGAACAAGGACTGACTGTTCCTCGTGTTCCTCGTACAGAAGGAGGCTACAGATCTAGCCGGAGCAGAGACCAAAAGCTTGGGCGGTGCGGTGCGGTGGTGCAGGGAGCTGCAGCAAGAAGGAAAGTGTGGATGTCAACCACCTTCTACTGCGCCTCATTAAGCAGGGTCACACAACTGAAAGTTCAATTGTTTTCAAAGTGAGTGTTCATACATTGTGTATAGACTGTGCTCTTAattttttaacttattttatacattaaaaaaaaaattgtgcatTTGTAAATAGCCATGTAATTATTGTTTCaaacttgtaaaaacaaaaaataatagatATTTTGATTGTAAACTTGTTCTGTCTCATGTTTTAAAGGACCAAAGTTGGTTTTTATATCGAGTGTCCTCTTCGTCCGTGatgttcttgttgttgttggcttAAAATCTTAAGCATGTGTTagcttttgttgtgtttttttgtttttactgtttCACCCTTCCTCATCTGGAGTTCCACGCCACAGCTGGTGTTTTTTGACTTTGGCAATTAAATGCTGTGCATGCATTGCGTTGTTTGTACTTTTTTCCTAAAAAAACTGTACTGTGGACTTAATGTGAGGTTTACTGAAGTGTTCCAGCTTTTTTTGCGCCATgtgttttgtcccttttttgcgGCCTCACTCCTCTGTTGTCCATTGTGTCTTGCACACATTCGAGTTTGTTGTGGCTtccaaggggaaaaaaaacatgtaattttACAGTTTCAATGTGAGATCACAACAAAAcctattttttcaacataatgccTTTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155504 lncRNA upstream 2102 16606703 ~ 16608542 (+) True G115295
TU155419 lncRNA upstream 178989 16430161 ~ 16431655 (+) True G115223
TU155397 lncRNA upstream 232125 16289237 ~ 16378519 (+) True G115208
TU155395 lncRNA upstream 341815 16262657 ~ 16268829 (+) False G115207
TU155573 lncRNA downstream 148274 16760435 ~ 16821676 (+) True G115350
TU155669 lncRNA downstream 545467 17157628 ~ 17158200 (+) True G115404
TU155707 lncRNA downstream 556412 17168573 ~ 17169818 (+) True G115437
TU155712 lncRNA downstream 570991 17183152 ~ 17186653 (+) True G115442
TU155715 lncRNA downstream 592502 17204663 ~ 17210211 (+) True G115445
XM_039815827.1 mRNA upstream 1181 16562196 ~ 16609463 (+) True ankrd12
XM_039815828.1 mRNA upstream 1181 16562196 ~ 16609463 (+) False ankrd12
XM_039815829.1 mRNA upstream 1181 16562196 ~ 16609463 (+) False ankrd12
XM_039815830.1 mRNA upstream 1181 16562196 ~ 16609463 (+) False ankrd12
XM_039815833.1 mRNA upstream 50216 16553745 ~ 16560428 (+) True ndufv2
XM_039815838.1 mRNA downstream 1413 16613574 ~ 16628872 (+) True twsg1a
XM_039815836.1 mRNA downstream 17519 16629680 ~ 16639812 (+) True ralbp1
XM_039815837.1 mRNA downstream 17519 16629680 ~ 16639812 (+) False ralbp1
XM_039815516.1 mRNA downstream 28653 16640814 ~ 16649143 (+) True rab31
XM_039815517.1 mRNA downstream 39006 16651167 ~ 16679372 (+) True vapal
XR_005640725.1 other upstream 84215 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 84216 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 382122 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 810151 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 886847 15723729 ~ 15723797 (+) True LOC120569145
TU155758 other downstream 795330 17407491 ~ 17440463 (+) False LOC120568596
TU155940 other downstream 1415119 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 1692988 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 2060401 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 2404897 19017058 ~ 19018726 (+) False LOC120568770

Expression Profile