RNA id: TU155520


Basic Information

Item Value
RNA id TU155520
length 1865
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G115309
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16543613 ~ 16560473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAGCAGTCGTCTGGCTTGATTTCAGTCTTATGTCTTCTTGTTTGCTGCTACAGCTTACTGTTTGAATTGCAGAGACATTTACATATTTGTTTCTAATTGTGTTTATctcaaatacacacaataaaaaaaaatgtcatctgCCTTTTCAACTCTTCATTGGTGTCCCACCATAACATGGAAAATGGCTCTCTTACCCAGTTTGTTTTGGATGGCCTCCAGGATGCTGTCTGAGTTGCAAAGCATGCAGGGTGTTGTTGTGCAGATCTGAATGAAGTATTTTCCCACAGGCTGACGCAGGAACATCGTATAGAATGTTGCTACTTCATACACTCTCATTGGAGCAATTTCTAGCACCTCAGCGAcctgaataaaaacaattacaagCATTCAATGAGGTTTATTTACATGACACATAAGACATGGTGTTGTATGGCCTTTCGTATAAATGTTATCCAACGGATTCTAATTGGCATCACACAGCTGTAAAACAAATTGCAGAAGAATCCCTGTACCTTGTTCATGGCGGAGATAGGGAGCCATCCATGTTGCCTCTGGGCTAAATCCAACACTGGGATGGTGGCTGCTTGCTTATGTCCAACAGGGTACATTGAAATGATAGCCTCAATCCTCtacagggggaggggggaaaaaagatatTTTACCATGAATGTGGAGCTGTTCAGAATAAGAGTCACTTTTGTACTTCAACAATTAGTACTTCAACCAATTAGACCaatttaaccaaaacaaaattATTACCTACACAGATATATTATAAAcctttatatataatatatagattTACAAGAGATGTACTGACACCATTATATGGATTGACAATAACTTCAAATAGTAATATGAAGGTTCAATGTTTTAATAATAACGACCAGGTGCTCATATTTTACTGTGGATATGGGGAAATCTCTTATCTTTtcagatgataaaaaaaagattgaaaacCGGAAAATTATTTGAATGAAACTAGTGAAACAGAGACTGGCTCGAAAAGTGTGTGAGACACCCATACAATTCAATAGAATAATTAATAACCGAAAAACATTATCATAATCATTAAAAAACTAAAGATAGGCATGTCTGCAATGCAAATCTGAACTGGCCAATTCAGGTGGAAAATATTAGATATTGGTCAGTGCATACCCTAAATTTACTGCTCAATAATGATGTCAACAtacctttttgttttcctcAGTGAAGTCAAAAGGAGTATCTGAGTTGTTGTCAGGAGTATCTCTGTGCTAAAACAGAAAGACCACAGGATTAAATGACAGTTAACATTGTTTACACCAGAGGTACAATTGTTTATATTAAATCctgtttcaaaaatgtaaagttGCTATTATGGATTAATATTTACTCAACAACAACCACTTCCATGTGAGTAACACACACTGCCCCCTTGTGAGCAGCAAATATCCTTTGTGCAGTTAAGTAAAAACGTAAAATGTAATAGTGTTTGAAgttaaaattgtcaaaaaaacaaaaacacctttACTATCAAGGGACAATACAACCATGGCATGTTTCCATTACATGAGAATATCACGTGATGTTTTTGTTGCACAGCATGGCTCTAATAGCCTCTGAAGGCAGCTACCAGGATAAATTAAGCAGCCATGGAAAACTGATAGCTTTGGGATTATTTAAGAAAATATGGAAGCACAAAAGGCTCAGGGACAGCTTCACCCCACAGGCCGTAAGACATTTGAACTCTTGAGCTCTGAGCTGATCGCAAGTCACTTTACCCAAAGACTGTCACTTTATCTTTATGTACTGTTttaacctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155482 lncRNA downstream 30718 16508577 ~ 16512895 (-) True G115278
TU155431 lncRNA downstream 223643 16317421 ~ 16319970 (-) False mppe1
TU155439 lncRNA downstream 226641 16316651 ~ 16316972 (-) True G115240
TU155377 lncRNA downstream 297720 16243792 ~ 16245893 (-) True G115200
TU155369 lncRNA downstream 321179 16221788 ~ 16222434 (-) True G115192
TU155522 lncRNA upstream 70 16558268 ~ 16560473 (-) False G115309
TU155540 lncRNA upstream 54830 16613028 ~ 16614925 (-) True G115323
TU155549 lncRNA upstream 192702 16750900 ~ 16751275 (-) True G115331
XR_005640831.1 lncRNA upstream 265104 16823302 ~ 16824660 (-) True LOC120569046
TU155651 lncRNA upstream 478668 17036866 ~ 17039107 (-) True G115391
XM_039815933.1 mRNA downstream 107372 16430142 ~ 16436241 (-) True napgb
XM_039816418.1 mRNA downstream 207657 16330952 ~ 16335956 (-) False LOC120568735
XM_039816416.1 mRNA downstream 216187 16317418 ~ 16327426 (-) True mppe1
XM_039815484.1 mRNA downstream 301053 16227938 ~ 16242560 (-) False LOC120568161
XM_039816659.1 mRNA upstream 127282 16685480 ~ 16712264 (-) True LOC120568912
XM_039816723.1 mRNA upstream 193795 16751993 ~ 16754766 (-) True LOC120568957
XM_039814995.1 mRNA upstream 198133 16756331 ~ 16811918 (-) False epb41l3b
XM_039814986.1 mRNA upstream 198133 16756331 ~ 16811701 (-) False epb41l3b
XM_039814994.1 mRNA upstream 198133 16756331 ~ 16802265 (-) False epb41l3b
TU155443 other downstream 207681 16330953 ~ 16335932 (-) True LOC120568735
XR_005640638.1 other downstream 341915 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other downstream 342356 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other downstream 342356 16182654 ~ 16201257 (-) False cc2d1b
TU155326 other downstream 395492 16144160 ~ 16148121 (-) True G115164
TU155525 other upstream 78910 16637108 ~ 16639812 (-) True G115312
XR_005640632.1 other upstream 198133 16756331 ~ 16802264 (-) False epb41l3b
TU155670 other upstream 481602 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 481602 17039800 ~ 17108904 (-) False ly97.3
TU155672 other upstream 484928 17043126 ~ 17045062 (-) True G115406

Expression Profile