RNA id: TU155670


Basic Information

Item Value
RNA id TU155670
length 621
RNA type TUCP
GC content 0.46
exon number 4
gene id ly97.3
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17039800 ~ 17108904 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACTAAGTATATAGACTTAACAGTGATACACCTCTCAATGGGACGTTACCATGACAGGACAAAGTAAGAACAGGTACAAAAAAGGGGGGAAGTGGATGAATACACCTCAGTCTTTGGCAGAAATCGAGACGGACGAATCATCAAGGTTGCAGTAATGAACAGAACAATGAAGTTGTTGGTCTTGGCTTTAACCGTCACCGTGCTGTTTACAGCTGgtGAAGCCCTGGACTGCCACCGGTGTGTCTCCAAAAGGGCTGGAGGAATCTGTGAGCTCACTGTAGAGAGCTGCAAACCAGAGAAGGATGCCTGCGCTGCTGCCCACTTCCTCAGAGCACCATaTGGCCAATACCAGAAATGCATGGCTCTGTCAGACTGCGAAATGCTGAAGACAAACTCCTACATCGACATCAAGTGCTGTACCGAAGACATGTGCAACACCTTATAAAATGACAATGTATTGGAGTAtctttgagcaaggcacttaaacCCAGGGACCCCTGCCGACTGCTGCAAGCGGCTCCCAGGTGTGAAAGCATGTATGAACTCAAAGTGGCTAGAAAAACTAAATTTCTTTTGTCAATCCTTTcccttgacaaataaaaatgtttgacaAAGAGCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155651 lncRNA downstream 693 17036866 ~ 17039107 (-) True G115391
XR_005640831.1 lncRNA downstream 215140 16823302 ~ 16824660 (-) True LOC120569046
TU155549 lncRNA downstream 288525 16750900 ~ 16751275 (-) True G115331
TU155540 lncRNA downstream 424875 16613028 ~ 16614925 (-) True G115323
TU155522 lncRNA downstream 479327 16558268 ~ 16560473 (-) False G115309
TU155697 lncRNA upstream 71240 17112716 ~ 17114744 (-) True G115428
TU155698 lncRNA upstream 78445 17119921 ~ 17121046 (-) True G115429
TU155699 lncRNA upstream 81246 17122722 ~ 17123058 (-) True G115430
TU155702 lncRNA upstream 92397 17133873 ~ 17135813 (-) True G115433
TU155703 lncRNA upstream 96278 17137754 ~ 17139518 (-) True G115434
XM_039814640.1 mRNA downstream 17407 17020735 ~ 17022393 (-) True LOC120567671
XM_039815850.1 mRNA downstream 24174 16847810 ~ 17015626 (-) False LOC120568369
XM_039815847.1 mRNA downstream 24174 16847810 ~ 17015626 (-) False LOC120568369
XM_039815846.1 mRNA downstream 24174 16847810 ~ 17015626 (-) False LOC120568369
XM_039815845.1 mRNA downstream 24174 16847810 ~ 17015626 (-) False LOC120568369
XM_039816998.1 mRNA upstream 124415 17165891 ~ 17176411 (-) True LOC120569119
XM_039816565.1 mRNA upstream 141686 17183162 ~ 17275789 (-) True LOC120568842
XM_039814936.1 mRNA upstream 255579 17297055 ~ 17298924 (-) True LOC120567855
XM_039816885.1 mRNA upstream 450811 17492287 ~ 17542090 (-) True LOC120569062
XM_039816886.1 mRNA upstream 450811 17492287 ~ 17542089 (-) False LOC120569062
XR_005640632.1 other downstream 237536 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 399988 16637108 ~ 16639812 (-) True G115312
TU155443 other downstream 703868 16330953 ~ 16335932 (-) True LOC120568735
XR_005640638.1 other downstream 838102 16182654 ~ 16201698 (-) True cc2d1b
TU155672 other upstream 1650 17043126 ~ 17045062 (-) True G115406
XR_005640621.1 other upstream 1441680 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1675406 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1803429 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1890498 18931974 ~ 18935477 (-) True LOC120568972

Expression Profile