RNA id: TU155758


Basic Information

Item Value
RNA id TU155758
length 1298
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC120568596
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17406497 ~ 17483553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATCTATCCAAACGACTCCAAGTGTGGCTCTCCATTGGATGTGTTTTAATACGCGTTTATGGACTTCAACGAATTTGCAACCACTGTGAATCCCCTTAAAGGCTACTTGAAGTGTCTTTCGTGCACCATTCCGATGAACGCTGAGCCAAGAGCAGCGCTGCGTAAAGCCAAATAGCCTGTGTGGACACCAGTCGATATTCGGCGGCGTGTGTAAGCGCGAAAGAAAAGGTCTAAATGTGAGCGAGTCCTGGAACGCTATTTGGAAGGAAAAGCAGCTTTAGCGAGACGCAAAAGTTTaaagaaaagttgagagaaagggaaAACGTGCTTTTCATGTGAATGCGCGCTTTTTCTGCCTTATTGGTCCATCCGGTGAAATTTGAATACATTGGGAAGTATGGAAATATTTCTGCAACTACTCTTGGCTGTAAATAACCTGTTGAATGAGTAGTTCGTCCCAGGAGTGTAAGTTAAATGATGCTGACTACTGCTAAAACCACAATTGACAGGAGATCAAGCTAAGACATCTGACAGCCACTGAATTATCACTCCTCTCTACACATCACATCTGACCGTTAGTTGACCCTTTCATCAACGCCCAACACTTGTGAAGAAGCTCCCTTGTTGACACACCTCATCAGCCAGGCAGAAGTGGCAGCAATCGAAGACAAAATAACTGAATGAGTGCTAACCATTGCCTGGAGCTGCTCAAACAAAAGTAGCAACATGCTGGCACAGTTCCCAAATGCACCATTGCCCCATTCAAAGCTGCATTTAATTTAGAAAATTCTCAGCAATATTGTCATTTCTGTGACGAAGCATCAGctgtaaagacaaaaaaaaagttccacAGACACCATACAGAACTAGATCAGAGATGCTTTGGCCCGCATTGTTCACTCTGCAAGCTGTGTGCACCAGTGTGGCACATGCCATGCAACATTACCCGGCAGCCTGGGGACACTATGATGTGTGCAAGTCCCAGATCTATACAGAGGAGGGCCTGACGTGGGACTACATGGCCTGTCAGCCAGAAGCCACCGACATGACAAAGTACCTGCGAGTGGCCCTCGACCCCCCAAATATCACGTGTGGAGATCCGCCAGAAACATACTGCGCTTTGGAGAATCCTTATATGTGCAACAATGAATGTGATGCTACCACAGAGGAGCTGGCTCATCCTCCAGAGTTGATGTTTGACTTTGAGGGTCGCAATCCCACAACATTTTGGCAGTCCACTTCATGGAAGAAATACCCAAAGCCCCTCCAGGTTAACATCACGCTGTCGTGGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155716 lncRNA upstream 182753 17217910 ~ 17224738 (+) True G115446
TU155715 lncRNA upstream 197280 17204663 ~ 17210211 (+) True G115445
TU155712 lncRNA upstream 220838 17183152 ~ 17186653 (+) True G115442
TU155707 lncRNA upstream 237673 17168573 ~ 17169818 (+) True G115437
TU155669 lncRNA upstream 249291 17157628 ~ 17158200 (+) True G115404
TU155763 lncRNA downstream 43943 17484406 ~ 17484811 (+) True G115488
TU155782 lncRNA downstream 117462 17557925 ~ 17559880 (+) True G115506
TU155789 lncRNA downstream 124792 17565255 ~ 17565482 (+) True G115513
TU155792 lncRNA downstream 138447 17578910 ~ 17579589 (+) True G115516
TU155889 lncRNA downstream 527277 17967740 ~ 17968042 (+) True G115585
XM_039816711.1 mRNA upstream 81832 17317113 ~ 17325659 (+) True amy2a
XM_039815706.1 mRNA upstream 267945 17097270 ~ 17139546 (+) True LOC120568298
XM_039816268.1 mRNA upstream 311667 17064933 ~ 17095824 (+) True LOC120568635
XM_039816269.1 mRNA upstream 311667 17064933 ~ 17095824 (+) False LOC120568635
XM_039816271.1 mRNA upstream 311667 17080143 ~ 17095824 (+) False LOC120568635
XM_039816889.1 mRNA downstream 103207 17543670 ~ 17552930 (+) False dcaf8
XM_039816890.1 mRNA downstream 103505 17543968 ~ 17552930 (+) True dcaf8
XM_039815471.1 mRNA downstream 131114 17571577 ~ 17574473 (+) False lrrc42
XM_039815470.1 mRNA downstream 131115 17571578 ~ 17574473 (+) True lrrc42
XM_039814560.1 mRNA downstream 140196 17580659 ~ 17583761 (+) True tceanc2
XR_005640725.1 other upstream 881062 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 881063 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1178969 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 1606998 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 1683694 15723729 ~ 15723797 (+) True LOC120569145
TU155940 other downstream 586817 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 864686 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 1232099 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 1576595 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 2076390 19516853 ~ 19516945 (+) True trnar-ucu_13

Expression Profile