RNA id: XM_039816209.1


Basic Information

Item Value
RNA id XM_039816209.1
length 3443
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120568596
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17406497 ~ 17483553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGACACGGTCCACTCAATTACTGTGGTGACCTTCAGATGGGCGCGGTTGTTCTTATCGTGCAATCTCCACCAGTTGGCAATACAGCACAATTAAAATGCGTGTCCAAAGCGACCTGTCACCGCGGCTGTGGGGTGACATCTATGACTCTTCGCCAAGGGAGCCTGGTAGACGCACCTAACTGTAGTTATTCTTTCAGCTCTGCCTTCAAAATTCGCCGAATAATTATACCAACAACTCCGGCCGGAGGAGTTTTTCtccctttcctttttcttttctttttgcagcaCAGCTCCAATCCCACACGTTCTTAGATGGAAGGATGCTGACTACTGCTAAAACCACAATTGACAGGAGATCAAGCTAAGACATCTGACAGCCACTGAATTATCACTCCTCTCTACACATCACATCTGACCGTTAGTTGACCCTTTCATCAACGCCCAACACTTGTGAAGAAGCTCCCTTGTTGACACACCTCATCAGCCAGGCAGAAGTGGCAGCAATCGAAGACAAAATAACTGAATGAGTGCTAACCATTGCCTGGAGCTGCTCAAACAAAAGTAGCAACATGCTGGCACAGTTCCCAAATGCACCATTGCCCCATTCAAAGCTGCATTTAATTTAGAAAATTCTCAGCAATATTGTCATTTCTGTGACGAAGCATCAGctgtaaagacaaaaaaaaagttccacAGACACCATACAGAACTAGATCAGAGATGCTTTGGCCCGCATTGTTCACTCTGCAAGCTGTGTGCACCAGTGTGGCACATGCCATGCAACATTACCCGGCAGCCTGGGGACACTATGATGTGTGCAAGTCCCAGATCTATACAGAGGAGGGCCTGACGTGGGACTACATGGCCTGTCAGCCAGAAGCCACCGACATGACAAAGTACCTGCGAGTGGCCCTCGACCCCCCAAATATCACGTGTGGAGATCCGCCAGAAACATACTGCGCTTTGGAGAATCCTTATATGTGCAACAATGAATGTGATGCTACCACAGAGGAGCTGGCTCATCCTCCAGAGTTGATGTTTGACTTTGAGGGTCGCAATCCCACAACATTTTGGCAGTCCACTTCATGGAAGAAATACCCAAAGCCCCTCCAGGTTAACATCACGCTGTCGTGGAACAACAAACGTTTTGAGATAAAGGACCGCTTTGCCCTCTTTGCCGGGCCTCGGCTACACAACATGGCCTCACTTTACGGCCAACTGGATACCACCAAGAACCTAAGGGACTTCTTCACCATCACTGATCTGAGGATTAAGCTGCTGAAGCCAGCCACTGGAGCCACCATGGTGGATGAGAATAACCTGTCCAGATACTTCTACGCCATCTCTGACATCAAGGTGCAGGGCAGGTGCAAGTGTAACCTGCATGccaacagctgtgtgtttgacAAGGGGAAGCTGGGCTGTGAGTGTGAACACAACACCACAGGGCCAGACTGCAGCCGCTGTAAGAGGCACTACCACGGAAGAGCCTGGAGTGTGGGCTCCTACCTCCCTATACCCAAAGGAACGGCAAATATATGTATTCCCAGTAATCATGGACCAGTGCATCGAGCAAATGCTTCATCTCTTGGTGTTGCAAATCGTAACCAAGCTCGGGTGTGTGACAACGCGATGCTGCGCTGTCAGAACGGTGGCACTTGCCACCACCATCAGCGGTGCCATTGTTCCCCTGGCTTCACCGGTGTCCTGTGTGAGAGAGCTCGCTGCCAGGGCGCTGAGGAGTGTGATGACCACTTGTCTGGACGGGCCTCCTTCCATCATCCCCCCATCAGCCAGCTCGCTTTTACCCTTGTAGTACTCCTGCTATTGATAGTTTCCCTTTGCTGAGAGACCTGAACAGCCTCCCATCCTCAAACAAAACCCTAAGTACACATGTGTTGAGACTGAACTCTCAACCTTAAGCAAATCAAGGACAAAGGCTGTGACAATGTGCTCAGCATACAATATAAGCAACTATTTTGTATATCCAAGGTGACAGTGGTGAGTGACAGTGTTGCAACAGGTTGTGCACTGATCATATACTGAATGCTAGATGGATTTGTGAAAGGCTTGGACTACTGTCTTATAATGTCACAGAGGAAGCGGTTGGAGCCCTCGCTTTGTGATTATGTCATTGGCTGACACTTCATTAAAGGCAGACTGGAGACTCAGATAGAGCTACCCACACTGAgagactgtactgtactgtacaaaaCTAGACACATGATTTCTAAGTATCATctgaagttattaaaaaaatgattatGTGGACGGGGACATCTTAAAACATCTTGCCTCACTGCCTCTTTCCTTACTTGCTATCCTCTTCATCTCCTTTCCTAACTCTTCCCTTTTTCCTTCACCTTCTCCTCCCTGCGCTTTGTTGACTCTGGTGATTTTAATTTGCTGAAGGGTGTCTGTTGTTTTGCCAAATGCTGCACATGTATTATTATCATCAAGGCCCTTGACAAGTACCAATGTAGTACTTCTAGTAATCCTTTGGCCTACTTTTTCAGAGGCTTTGTAGTCATGCTTGAGCTCACCTGTTCGTGGGGGGGAAAGTTGTAACATACTGTAACTGTATTTAATTTTTGTATAAAACAGATATTTTCATGACTACGCAAAACAAAAAGATGTATTACTTGTTTTCTATTGCTGCCAACCTGTCCTAGATGTGGACTATGAGTGTGCAGAGTTTGGCTGTATTATTTCTTTGCTTGTGTGGCACATGGTTCTCTTTATTTGAGAGCTGCTGTCAAAACTATGTTTacatacacacttacacaaTACACTTCCACcaaagggaaaaagaaaaaaaacatgtctttgTCTTGTTGTTGAACAGTAGTAATCTTATTAAGTAGTAACATGACATTTGAGACAAGATGTGTAGAATAAAACAGTGTATTGATTGTAGATAGGTACAAGCCAATGACAATAGCGGAATGtcattttaaaggatttttttaaGCTATCAATGCCAATCGTTGACCTATTCACTGAAGCAACAGTTGCTGGTAGCAATATATCAACAATCAACAACAAATTAATTCCTAGTTCTATAACTACAGTTGCTTTTTTATGTGTTGTAACCATCCTTGTTGTGCTCATGAAACATAAAAAATCTCAAGCCAAAATCCCATCTGCTATATGTAAATTTAACGAAAAGACTTTGACAAAAAGGAGATTGCATGGCTGTCGCAGAGGTTGTCCATCTCAAATCTGTAATCAAATCTAATCCTTGAATCAAATGGAAGAAGGGGAAGGTTTTCTGAGCTGGTACGGTTAAAAGCCTGCATCCTGCTGCGGGAGCCTCAGAGAAGCGAAGCGCTAAGGTAATGAGCTTTAATTCATGGAGGGTCAATGAATAGAAATGAAGTTGCATCCCACTGGGTGACATACTGAGCACTGAGACCAATTTCATTTGAGAGATTAATTTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155716 lncRNA upstream 181759 17217910 ~ 17224738 (+) True G115446
TU155715 lncRNA upstream 196286 17204663 ~ 17210211 (+) True G115445
TU155712 lncRNA upstream 219844 17183152 ~ 17186653 (+) True G115442
TU155707 lncRNA upstream 236679 17168573 ~ 17169818 (+) True G115437
TU155669 lncRNA upstream 248297 17157628 ~ 17158200 (+) True G115404
TU155763 lncRNA downstream 853 17484406 ~ 17484811 (+) True G115488
TU155782 lncRNA downstream 74372 17557925 ~ 17559880 (+) True G115506
TU155789 lncRNA downstream 81702 17565255 ~ 17565482 (+) True G115513
TU155792 lncRNA downstream 95357 17578910 ~ 17579589 (+) True G115516
TU155889 lncRNA downstream 484187 17967740 ~ 17968042 (+) True G115585
XM_039816711.1 mRNA upstream 80838 17317113 ~ 17325659 (+) True amy2a
XM_039815706.1 mRNA upstream 266951 17097270 ~ 17139546 (+) True LOC120568298
XM_039816268.1 mRNA upstream 310673 17064933 ~ 17095824 (+) True LOC120568635
XM_039816889.1 mRNA downstream 60117 17543670 ~ 17552930 (+) False dcaf8
XM_039816890.1 mRNA downstream 60415 17543968 ~ 17552930 (+) True dcaf8
XM_039815471.1 mRNA downstream 88024 17571577 ~ 17574473 (+) False lrrc42
XM_039815470.1 mRNA downstream 88025 17571578 ~ 17574473 (+) True lrrc42
XM_039814560.1 mRNA downstream 97106 17580659 ~ 17583761 (+) True tceanc2
XR_005640725.1 other upstream 880068 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 880069 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1177975 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 1606004 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 1682700 15723729 ~ 15723797 (+) True LOC120569145
TU155940 other downstream 543727 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 821596 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 1189009 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 1533505 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 2033300 19516853 ~ 19516945 (+) True trnar-ucu_13

Expression Profile