RNA id: TU155864


Basic Information

Item Value
RNA id TU155864
length 486
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G115577
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17607456 ~ 17608257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgggagtcgaactgaatcattacactGGCTGAGCAATGCCAGCCAGGGGTATCCAGATACATTGCGCAACAAGGAACAATGGCTGCCAGGTCGACCAGAGAGAcccataaatggacgcCGGAGGAAACCCAGCAGCTGATCCACTTTCTGGCTGAAAACGAGCAGTAATCATTTGAATTCATTCCTGTTCATGTacctgtacattgttgttggttatgatacaggacactaatgaaagaaatggggttggagggaaaggttactggccaacaggcatcacactatggtctggaatttcagaatagctgtagttttgtttgtttgtggtcttgtgtgtcttttagttttatacatttgagtgccttttttaGTGTGACATCTAAGTTATTGTTCTAATAGTTGATAATGGTTCTCTACATTTTTCTataatgtttttgcatgttatgtttatttttttgggaataaagacatttttttttaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155850 lncRNA downstream 33331 17573463 ~ 17574125 (-) True G115570
TU155848 lncRNA downstream 34327 17572897 ~ 17573129 (-) True G115568
TU155842 lncRNA downstream 54506 17548220 ~ 17552950 (-) True G115563
XR_005640743.1 lncRNA downstream 250247 17356351 ~ 17357209 (-) True LOC120568661
TU155728 lncRNA downstream 304898 17302264 ~ 17302558 (-) True G115458
TU155934 lncRNA upstream 357556 17965813 ~ 17967692 (-) True G115624
TU155949 lncRNA upstream 444727 18052984 ~ 18058106 (-) True LOC120568693
TU155961 lncRNA upstream 466811 18075068 ~ 18076412 (-) True G115640
TU155962 lncRNA upstream 468283 18076540 ~ 18077059 (-) True G115641
TU155965 lncRNA upstream 472941 18081198 ~ 18083844 (-) True G115644
XM_039814559.1 mRNA downstream 16091 17583790 ~ 17591365 (-) True cdcp2
XM_039815472.1 mRNA downstream 27881 17575306 ~ 17579575 (-) True tmem59
XM_039815473.1 mRNA downstream 36068 17567352 ~ 17571388 (-) True yipf1
XM_039815474.1 mRNA downstream 40410 17564711 ~ 17567046 (-) True zgc:113691
XM_039816892.1 mRNA downstream 42919 17555980 ~ 17564537 (-) False ndc1
XM_039815773.1 mRNA upstream 391643 17999900 ~ 18019896 (-) False ranbp3b
XM_039815768.1 mRNA upstream 391643 17999900 ~ 18019896 (-) False ranbp3b
XM_039815771.1 mRNA upstream 391643 17999900 ~ 18019515 (-) False ranbp3b
XM_039815766.1 mRNA upstream 391643 17999900 ~ 18019512 (-) False ranbp3b
XM_039815769.1 mRNA upstream 391643 17999900 ~ 18019507 (-) False ranbp3b
TU155671 other downstream 498552 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 562394 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 565980 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 805192 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 967644 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 874899 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1108625 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1236648 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1323717 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1613534 19221791 ~ 19222726 (-) True G116084

Expression Profile