RNA id: TU155906


Basic Information

Item Value
RNA id TU155906
length 287
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G115599
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18016563 ~ 18019614 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACCAACTGTATTTGTTGCCTTAAACTGTTAAACTGAAAAAAGTACACGTTTGACCTCTGAAACTAAGATTTTTACTGCAGGGGGTCTTTAAGATGTAATGAGAAACTAATGTTGGTCTAGATACCTCACCTGGCTCAGAGTCAGAGTTCCCAGTTGGAGACTGGCAGAAACTTGAGGGCATGAATACATTGTTCTTGGGAACAGAATGTGGGGGTGGGAACGATGACGTCCTTTCCCTTTTCACAGGGGGGCAATAGCTCCCTTCGTCTTTatctgaatctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155889 lncRNA upstream 48521 17967740 ~ 17968042 (+) True G115585
TU155792 lncRNA upstream 436974 17578910 ~ 17579589 (+) True G115516
TU155789 lncRNA upstream 451081 17565255 ~ 17565482 (+) True G115513
TU155782 lncRNA upstream 456683 17557925 ~ 17559880 (+) True G115506
TU155763 lncRNA upstream 531752 17484406 ~ 17484811 (+) True G115488
TU155908 lncRNA downstream 2948 18019905 ~ 18020110 (+) True G115600
TU155947 lncRNA downstream 35911 18052868 ~ 18058243 (+) True G115633
TU155953 lncRNA downstream 43752 18060709 ~ 18065238 (+) True G115636
TU155984 lncRNA downstream 154722 18171679 ~ 18174071 (+) True G115660
XR_005640695.1 lncRNA downstream 215660 18232617 ~ 18233706 (+) True LOC120568296
XM_039816979.1 mRNA upstream 31023 17975976 ~ 17985540 (+) True LOC120569107
XM_039816980.1 mRNA upstream 31023 17978594 ~ 17985540 (+) False LOC120569107
XM_039816604.1 mRNA upstream 43007 17972055 ~ 17973556 (+) True larp6b
XM_039814749.1 mRNA upstream 48870 17787786 ~ 17967693 (+) False LOC120567749
XM_039814778.1 mRNA downstream 10403 18027360 ~ 18029832 (+) False LOC120567767
XM_039816210.1 mRNA downstream 18995 18035952 ~ 18041729 (+) True im:7138239
XM_039814518.1 mRNA downstream 26440 18043397 ~ 18045228 (+) True LOC120567609
XM_039816362.1 mRNA downstream 31109 18048066 ~ 18052429 (+) True cib3
XM_039816363.1 mRNA downstream 31109 18048066 ~ 18052429 (+) False cib3
TU155758 other upstream 576100 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1490134 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 1490135 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1788041 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 2216070 15764698 ~ 15800493 (+) False st6galnac3
TU155940 other downstream 10323 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 288192 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 655605 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 1000101 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1499896 19516853 ~ 19516945 (+) True trnar-ucu_13

Expression Profile