RNA id: TU155947


Basic Information

Item Value
RNA id TU155947
length 3615
lncRNA type inter_gene
GC content 0.39
exon number 8
gene id G115633
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18052868 ~ 18058243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGTTTAGAAAGTACAGTACAATTTAAGTAGATCTCTTTTTTCAATGTGatatttacaatgtttttttcacttcactttttttgaaatgtattgtaTTATTCTCCCTGTGTACTTCACACTGAATGGAATGAAAATATGGCTGTAAAAAGGGATGTACACTATATTAAAGGATatgatttaaaaactaaatcaaaGAGGGagaatcatttcagctgtaaatTATGCAGTTTGAGTCCCACAAAAGTCTGCTTCCTACGTTTCTGTCTATGACTTAAAAGCTACATTATTACACAAATGAGAAAACAGCACTATCTCCACATTTCAACATCCAGACTCTTTCTACTTAATCTTCCATCATGCTAAATCCCACTCCTATTGTTGTAGCAATGCCATTTCTACAGAGTCCTGTTTTTGGCTCAGTGgatgacacaaaacaaaaaagcccaTACATTCAACTGTACAGGTCTACAAGTATGTCTgaaaattacattacacaaaTATGCACAGGTCCAAGATTCACAATGCATAGCTCACCTATGACAGAACTGAGTATTAGCGGTTAAGACAAATGGCCATGGTAGTCATGAGGTCCCAAATtatttgatatttaaaaaaaaaaaaaggacgcAGGCAAGAAAAGCAGATCCTCCCTCGATATTGTGCATATAGGAGTTTGATTTTCAGACTAGTAACAAATGTAGGAAGGAAACATGAGGAACAGTGGAAATAGATTGAGACTCAACGTCGATGTTAAATAGTGGGTACATGTTTGTATTGCACAGGTCTAGTTCCCTGTGGCTCGCAATCCTAATAAAATACTGATTATAATTTGAATTCAGGTGGTCACCTTTGATGCATACTGTGCCTCTGGTGCCACCTAGCTGTCAAACTAAAGGGCTACAATCAAATATAAACAAGAAATTGTACAATACTAGTGGGAGCACCTTTCAGCTTTGGACAAGCCAGCTTTCATTGAAAAGCCAAAAAACATCACTTTTAAACTATAATTTGGCAGGGCAGTAACATAGAAACAGAGGCTGGCaaattatttttcctttttataaattatatatatatataagtacaTTAGGCAGGGtacaaaattagcaccatccacTAGGCAAATACTGGTAAAAGATGCAAGTGGCTAACAAATGGtttctattgagtggctggtaaaatttgagcattcactagccatttggccaGTGGACAAAACAAGTTAATTTTGCACCCTCACATTAGGGCAATGTTTTCAGTGCACTAATACCAGGACAGCAGATCACTCGCAGTGAAATAACAAAGGAGATTAAGTCATTACTTATAAGTAGGTCTAGTAAAACATTTAGGAATTATACCCATTATATAACCAagactgaaaacattttttaactaAGTAATTGTATTGCAAAACTATCACTTGGCACAGACTACACACAAAACACGAGTTACTGGTAAAGTGCAAGGAGAGCTGCATGGATAGCAGGAGAAGGGGCTTACAGTGCGAAACTTCAAGAGTGATTTTTAACTGCTGATCAGAGACGACCAGAGACGTCATTTAGCTTGACTGTGAATCAGAGCTGctacaaaaccttcaaaaactATTTACAAGGGAACACTTTAAAGTAATCTTTGGAGCAGAAACAATAAGTcaacagagaaaataaaatgcagaCTATATTGATGATTAATTTCAGTCAACTTCCAAgcaaaaacaccaaacattCGCAAGCTCCAGCTTCTCGAATGTGAGGATTGCTGCTTTCGTTGCTTTATTATGATTTGGTTTTATAATGGTTTGGGGTTTTGGACTTacttggacaaaacaagatatcTTAAGTCGTCAATTTGGGCTTTAGGAAACTTTAACaggcatttttcaatattttctgacattttatagatggAACAATGTATAGATTAATCAAGAAATTAAGTGGCAGAACaaatgataataaaaacaattgttGTACTGTACCGTACTCAATTTTGGAGAATTGTTTATATTATACAGCGTGCACATCCTGATACTTTCCTTAATGGTGTACTTACACATGGGTAACAACAATGTTCTGCTGATTATTTGACATTAGAACTTTATCTAAAGAGACAGATCTGGATTGTATTTTTAGGTTTTGTGTTGCCAAACTGCACCTGAAAGTTATTGCCGAAAAAGAGTTGGTGGCAGTGTGTAATGATCAAGGCAGGATGAAACACGCATTATAAGTTGCATCAAATGGTTGTCAAGGACTACAGGCAAACCAAAAAGCAGAACTCAAATAGAAAACCTTTCAATCTAATTCCTCTCTGATCCTTGACTGCCTGATGCGTATTATGATTCTCAAcagctgaaatgaaaatgaaagcatGTGCAACTCCGTTCACTAGAGTTCAAGCCAATCAGTCTCTGGTTGACCTGCATCacttaaaaaggaaaaaggtactaataaaatatatttgttttgtcatcCTTGGTTGGGCTACCGGCTGCGTGAAATATGAGTGTGTAGTACAACAAGACTAAACATCAGAAGTAAGAGCCTGTCTTTTGTGTGAAAAGAAACATCTGGACAATGATCCTGGTGGAGTCCTCTACCAGTCAAGCACTCGGACCCATGAAGACAACAGATCTCCTTAAAATGGAAGAGATGCAGCATTGGAAGCTTTCAGAAGATGAGAGGAAAAGTCCTCTGCTTACTGGGAATATAATGGTTTGTGTGGACTGGGAGGACAGGCCATGGAtgggtagaaagaaggaaggagaagGAAGTGCTAAGAGCAAGCACAGTCCATTTATGTCCAGCCAGCTGGCAGCCAGTATCGAAGGCCTCGGCCCTCAGAGTAGGCTACAGCGGAAGAAGCTTGTCTTTTTCTGAGGCTCTGAGATCTTGACTCCGTGACTGCTCCCCTGCGGCATGTTGCCCtcCAATTTTGTGTCCATTTTTGATTTGATGTCTCTGGCGAGGGTCAAAAATGCATTTTCCACATTGATGTTGGCCTTTGCACTGGTCTCCATGAATTTTATTCCATACTCTAATGCGAGCTTCTCCCCCCTGTCTTTGGACACCTGCCGCTTGTCGTTGATGTCACACTTGTTGCCAAGGACCATCTTCTCAACATCAGAGGATGCATgCTCCTCTATGTTCCTTATCCAGTTCTTGATATTCTCAAAAGACTTCTCGTTGGTGATGTCGTAGACAAGCATGATGCCCATTGCTCCTCTGTAGTAGGCTGTTGTGATTGTTCGGAAGCGCTCCTGTCCAGCTGTatccCATATCTGTAACTTTATCTTCTTGCCGTCAAGCTCTATTGTTCTGATCTTGAAATCAATGCCTATAGTTGAGATAAACGTTGAGTTGAAGGCGTCTTCTGAAAACCTGAAGAGGACACAGGTCTTCCCGACACCAGAGTCGCCGATTAACAGTAATTTAAACAAATAGTCGTATGTCTTCGCCATACTTGATATTATTGCGGAAATCCCGCCCGGCGAAGCAGCGATGTGAATATGCTGaagtgtcgccccctgctggctcGGAATTCACCAGCCGTTTATATCTAACTGAGACCGtggtctatctgtctatctatctccTAGCTATCTATCAGTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155908 lncRNA upstream 32758 18019905 ~ 18020110 (+) True G115600
TU155907 lncRNA upstream 33254 18016563 ~ 18019614 (+) True G115599
TU155906 lncRNA upstream 35911 18016563 ~ 18016957 (+) False G115599
TU155889 lncRNA upstream 84826 17967740 ~ 17968042 (+) True G115585
TU155792 lncRNA upstream 473279 17578910 ~ 17579589 (+) True G115516
TU155953 lncRNA downstream 2466 18060709 ~ 18065238 (+) True G115636
TU155984 lncRNA downstream 113436 18171679 ~ 18174071 (+) True G115660
XR_005640695.1 lncRNA downstream 174374 18232617 ~ 18233706 (+) True LOC120568296
TU156017 lncRNA downstream 175500 18233743 ~ 18234058 (+) True G115690
TU156034 lncRNA downstream 204153 18262396 ~ 18262661 (+) True G115705
XM_039816362.1 mRNA upstream 439 18048066 ~ 18052429 (+) True cib3
XM_039816363.1 mRNA upstream 439 18048066 ~ 18052429 (+) False cib3
XM_039814518.1 mRNA upstream 7640 18043397 ~ 18045228 (+) True LOC120567609
XM_039816210.1 mRNA upstream 11139 18035952 ~ 18041729 (+) True im:7138239
XM_039814778.1 mRNA upstream 23036 18027360 ~ 18029832 (+) False LOC120567767
XM_039816329.1 mRNA downstream 16864 18075107 ~ 18090043 (+) True ap1m1
XM_039816330.1 mRNA downstream 16864 18075107 ~ 18090043 (+) False ap1m1
XM_039815690.1 mRNA downstream 89655 18147898 ~ 18149844 (+) True LOC120568288
XM_039815692.1 mRNA downstream 117740 18175983 ~ 18231000 (+) True LOC120568290
XM_039815693.1 mRNA downstream 117740 18175983 ~ 18231000 (+) False LOC120568290
TU155940 other upstream 22973 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 612405 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1526439 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 1526440 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1824346 16226307 ~ 16228522 (+) False LOC120568164
TU156065 other downstream 246906 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 614319 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 958815 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1458610 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 2314992 20373235 ~ 20375633 (+) True LOC120567833

Expression Profile