RNA id: TU155984


Basic Information

Item Value
RNA id TU155984
length 1802
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G115660
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18171679 ~ 18174071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gTATCAATAACATTCTGTCCAATAAAAATATGTGTGACCCTACTTGATGTCATGAGTCACCAGGGGCTCACCATCTGTTTTTCCAGACTTTCAGGATATAATGCAGGTTCCATCACATTACCATGAAGACATTCATGCCATTTCACTGTAGATAAACAACTTCATTGTGCACTTGGATGAAGATTAATTTGTTTGCGTCATTAATGTATGTCTACACTTCATTCAATTATTAATTTTAGAGTGTGGAAAGGAAAATAAAGTCAGTGCCACAGACCAAAATTCGTTACATTACAATCTTGACTTTTGTCTgtattttgtgattattttatgCAGTAAGTCTTAAGGTTTATGCATTATATGTTCAGTTATGTGCATTTTTTGTTTCACTGGGTTGGAAGAGGAATTTTCATCCTGGGAAGTAAAAAATCTGAAGGGCTAATTCttattctctgcaaatctctaTGTCATTTTTAATCACAGCTTCTGGTTAATGGTGCAACCTGTGCCAGAGAATCTGCAGATAAAGTAGATGTGTAGATCAAGAAAATCATCAAAACAGTGGATGTCAGTGCCTCCCTTATTACAAAATGAGGAATAGACTTGTTGGAAAACCTTAGAATCAACCCAGCAGTTCAGGGGCAACAGAGTAATATCATGACTAAAACCAAAGAGAAACTAAGTCCAATAACAAACACTTGTTAATGGACCCCCCAACATTGGGTTGTGTCCAAATCTCAGGGAAAGGATGCACAGCAGCCACAATACCCCTGGGAAATACAGGACAGAGTTTCTAAAGGAGGGACAGACAAAATCTCTGGCCACACCTCCTCAAAGCTCATCTTTAAGCTTTGCTTCCTCATCATCCATTTCTGAAAGTGCCTCCTCCATGTCATCCATTGTTTCTTCATCATCAATGTCTTCGCCATCAtcaacaccatcatcatcatcatcattatcatcatcatcaacttcGGTGTcttgttctttgttcttttcctcctcttctttccgTTTCAGGTCATCTTGCTCCTGTTTCATTTTACTCTCTGGTTCCTTGTCACACCCCATGTCTCCATTGTAATGTCTTCTGCTTCCTTGACATCGTCTGTGATGAGGAAGTTGTCAAAGATGGTACCAGATTTCACCTGCCAAAGATCAAGTCCTAAAACAGATACTTTGTCAAACTTGTAGATGTTTGAATCAGGACTGTATTCAGGATTGTCAATCTCAGGATGCACCCAGGGTCCTTTGTAGTTAGGGTTGTCGATCTGTTTGGGCTTCCATTCTCCCTTGTACTCTGGGTTTGGGATCATGGGTGGCTCCCACTCTCCATCCATATCCTCATCCCAGTCTTCAGGCTTTTTAGCGTCAGGGTCTGGAATGTTTTCAGGTTTGTCCCAGCCCTCAGGCTTGGTGTCATCAGCATCATCAATCTTGGCACGATCATCCCAGTCCTCTGGCTTCTTGGCTTCGGGGTCCTTAATTTTCTTAGGAGGCAGGAAGTCCCAGTCATCCTCCAGACTGCCAGATTCTACCTTCTCGTTATCAATCTTCACCTCATAGGTCTGATCTGGATTCAGGATTAGCGTGTACATGTGGGTCAGCTCATCATCCTAGATGAAACAGAAGTGTTTGAATTAAGCCACTGGTGCAGAGGCAACacatgtttgtttgtatattacaagaactttaaaaaaaaatttaaatgccAGAATTACCTTGCACTTAATCTCTTTCTTGATGAGGTGATTCTTGCCCTTGTAATTGAAGATGACATGGACTTTCTTGGTGCTGTAGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155953 lncRNA upstream 106441 18060709 ~ 18065238 (+) True G115636
TU155947 lncRNA upstream 113436 18052868 ~ 18058243 (+) True G115633
TU155908 lncRNA upstream 151569 18019905 ~ 18020110 (+) True G115600
TU155907 lncRNA upstream 152065 18016563 ~ 18019614 (+) True G115599
TU155906 lncRNA upstream 154722 18016563 ~ 18016957 (+) False G115599
XR_005640695.1 lncRNA downstream 58546 18232617 ~ 18233706 (+) True LOC120568296
TU156017 lncRNA downstream 59672 18233743 ~ 18234058 (+) True G115690
TU156034 lncRNA downstream 88325 18262396 ~ 18262661 (+) True G115705
TU156058 lncRNA downstream 122075 18296146 ~ 18297509 (+) True G115723
TU156073 lncRNA downstream 205041 18379112 ~ 18385969 (+) True G115733
XM_039815690.1 mRNA upstream 21835 18147898 ~ 18149844 (+) True LOC120568288
XM_039816329.1 mRNA upstream 81636 18075107 ~ 18090043 (+) True ap1m1
XM_039816330.1 mRNA upstream 81636 18075107 ~ 18090043 (+) False ap1m1
XM_039816362.1 mRNA upstream 119250 18048066 ~ 18052429 (+) True cib3
XM_039816363.1 mRNA upstream 119250 18048066 ~ 18052429 (+) False cib3
XM_039815692.1 mRNA downstream 1912 18175983 ~ 18231000 (+) True LOC120568290
XM_039815693.1 mRNA downstream 1912 18175983 ~ 18231000 (+) False LOC120568290
XM_039815694.1 mRNA downstream 17354 18191425 ~ 18230992 (+) False LOC120568290
XM_039815695.1 mRNA downstream 84059 18258130 ~ 18264859 (+) True LOC120568291
XM_039815701.1 mRNA downstream 91846 18265917 ~ 18274620 (+) False LOC120568293
TU155940 other upstream 141784 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 731216 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1645250 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 1645251 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1943157 16226307 ~ 16228522 (+) False LOC120568164
TU156065 other downstream 131078 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 498491 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 842987 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1342782 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 2199164 20373235 ~ 20375633 (+) True LOC120567833

Expression Profile