RNA id: TU156018


Basic Information

Item Value
RNA id TU156018
length 1648
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G115691
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18232868 ~ 18234515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACATACATAACTGCAATGCTGACTTGTGACACAAGGATTTACAAGTTCTATTTAACAACAGaataaaagttaagcactgtaagtAGAATATTTGGTGAAATAGGATTTCCAagctatttttaatataataacaGTTAAGCACACTGATGGAATGAAAGTAGAATTTTGGTACTAGTTAATGTGCAATATCAACTAACAGGTATGAAATAGGATTTACAAACTATAATACCATTGTTAAGCACTGACTGaatgaaataagccaattcttaAGTTACGTTAAGTAAAATATTTGGTACCAGAACAGATAATGAGCAGATATCAAGTATTAGAGGTATAATCTAGGATTTACAAGatatatttataaatagaatagttaagcactgtaacaaTGAAATAAGCAGCAAATTGTATAGGAAGTAATTGAGATCTTTGGTATCAAAGAATGTGCAGGATACCAGGTAATATACATTTTGACATTAAATTTACACATGACAACAAGTGGGAACAAACACAATTAACAGCAGGAAATCTGGCTGTAGAgaacacagccaatcagaacgtgTGGAGTGGTTGGGGTCTGCGTGGGGTAGTGGGCTAAGAATTGCGAGACAGTCTAAGTAATGATAATCAGTCTTTCAAGCCTGACTACGGGATCTCCAGAATGAGGCAGCGCAAAATGGGCATATCTTCAGTGATCCCTCGTGCGCCTGTATAAAGGACAAACAACCTCACCATCCCATATCCATCCAAGGCGCTGCCCTCAAGGCAGGGTCatggggaaataaaaaaaaaaaagaagaagaaaaataatttcCACAGAGAATAGTGTGGATTGGGTGAGTGTAGTCTGGCACTTCTGGCTTCTTGATGTTACTGACTGCAGGATAAAGAAAGTGTTCCAGTTGTCAGTGATGCGGGGGTGTCAGTAGTCAGCCTAGGTTTAAGGGGTCGGCTGTGGGTCCCTCTCAGCTGTGCGGCGCCTTTTTCCGCCTTCACGGTCAGATGCTTTCAGGTAACGCGTAACGTTAACCTGGACCGCCTCATCAGTGGCTCTCCAACAGACACATTGGCACTGAAATGTTGCTGCATAGTTTCCATTTTGTTGTCCATGCTACACACAACATCGCCAAACTCTCCAAGACGTCGCAGCATTAGGGTCTGATCTGCACCTACAGGGGTTCccagaataaaagaataaagtagTCAGTCCTGGTCCCACAACTACTAAACTATGACATTTATATCTAGGTCTACTACATGTTCAGGTGGCCCCAGTGGGAATTAAACCAACAACCACAGGTGTTTGCAAGTTTACCTGATTGCCAAGTGCAAGCAAACGTCTTCAACATTGTCCCAACTTGCTTCACCTGCTCTTGAAGTGAGCCGCTGTCATCCGAAGCTACAAAATGAAAAGGCATATGGTAATTTTGAACCtaaattacacacaaaaaaagtaaaatttaagAAAGAGTGCATATTCTCACCTGCTCGTGCATTGCTTTCCCTCAGGGTGTGGTTCTCCTCCCTCAGAGCTTGGTTTTCATTCTGGAGTCTCTGGAAatctacataaaataaataaataaataccataTTTCCTGGAAGAAAAGTTTAGCAGTAGAGATAACACACATCAGGTACTGATAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155965 lncRNA downstream 149024 18081198 ~ 18083844 (-) True G115644
TU155962 lncRNA downstream 155809 18076540 ~ 18077059 (-) True G115641
TU155961 lncRNA downstream 156456 18075068 ~ 18076412 (-) True G115640
TU155949 lncRNA downstream 174762 18052984 ~ 18058106 (-) True LOC120568693
TU155934 lncRNA downstream 265176 17965813 ~ 17967692 (-) True G115624
TU156041 lncRNA upstream 25409 18259924 ~ 18260284 (-) True G115710
XR_005640696.1 lncRNA upstream 35819 18270334 ~ 18286055 (-) True LOC120568297
TU156057 lncRNA upstream 61047 18295562 ~ 18295788 (-) True G115722
TU156082 lncRNA upstream 143885 18378400 ~ 18385959 (-) True G115738
TU156134 lncRNA upstream 219518 18454033 ~ 18456002 (-) True G115782
XM_039815691.1 mRNA downstream 57542 18171649 ~ 18175326 (-) True LOC120568289
XM_039815684.1 mRNA downstream 62379 18151116 ~ 18170489 (-) False LOC120568287
XM_039815688.1 mRNA downstream 62379 18151116 ~ 18170489 (-) False LOC120568287
XM_039815682.1 mRNA downstream 62379 18151116 ~ 18170489 (-) False LOC120568287
XM_039815683.1 mRNA downstream 62379 18151116 ~ 18170489 (-) True LOC120568287
XM_039815702.1 mRNA upstream 2275 18236790 ~ 18244258 (-) True LOC120568294
XM_039816978.1 mRNA upstream 65897 18300412 ~ 18306617 (-) False LOC120569106
XM_039816977.1 mRNA upstream 65897 18300412 ~ 18306617 (-) True LOC120569106
XM_039814932.1 mRNA upstream 246155 18480670 ~ 18494488 (-) True sppl2
XM_039814933.1 mRNA upstream 248625 18483140 ~ 18494488 (-) False sppl2
TU155671 other downstream 1123964 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1187806 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1191392 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1430604 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1593056 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 248641 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 482367 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 610390 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 697459 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 987276 19221791 ~ 19222726 (-) True G116084

Expression Profile