RNA id: TU156130


Basic Information

Item Value
RNA id TU156130
length 1232
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G115781
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18454033 ~ 18455620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaaGTTTGTGCTAGACTGGGTGGATAATGGATTCAACTGTGAAACAAACTTTTGGCTGCTAAACCCACTGTCCCTTCCTGAGTCCAGACTGTGTCCCTCTCCCCCAATTCAACAAGAGGCTTCATCCCTGGGTTGCttagttttgaaaaaaagtgcccTTGTATTTTGTCTGTGGCCTACTGTACATCAGTTGTCATGGAACGATGTCTGAGTCTTTGTACACAAGCAGATGACGAACTGAAAATGAAAGACTTTGGGAACTCTGTTGGATAATCAAAGATGGTCCATCCTCGAACAAACTCATCCATTGGAGAAGCTGGTTGAAGTGGCTTACCTCCTCACACTTTGCAGTATTCCAAAATGGCACACAGGATAAACACAGGACTTCTGTTGGgtgatatattttaaaatgtatttacgtttctttcttttccttttttttttttagttttcacaTTTACAGCTGAAGGATATTTAAACTGTTTTCAAAAACACGTTGGTGAATGAATTCCTCAGATTGACCAATAGCTGCTTCTTTGGTATATTTTAGTGGGTAtagaagataaaaaaatatatataaatatattgttgatgtttttgtaCATAGCTGATATTTTGTCATTCTTGAGGTATTTCCAGTCatagaaaatgtttttacatgttagtctcttatgtttattttttctaatCCAGAAAATCATACTAATTAGCTTTTTTGGACTCATGGTCAACCAACAGCGCGATGCCTGGGAGGAGTGTTTGGCGTCTTCAGCTTAAGATGTCTGCCCGTCATATCAAGATCAAATAAAATAGTGCTGTAAATAACGCAGCAAGGTGCATTCATGAAGAGGCTCCGGCAGTGCTTCTGTTATTTtccattctcttaatacatgTGTTTTTCCAAACAGTGTTGTTTCTTCAGTAAGTACTGAGATTAtcatgtgtgtatataaaggGAAGTTGTGCTTTTATCTCAGTGAGTAGAGTATGGAGAGGTAAGAGTTTGTTTCAGACAGAGCcagacatacagtaaatatgatGTACACACACAACTCAACTTACATACAAACTAGAGCCCGAGTGAGATTGGATTTTTGAGgccaatacaaataaaataagaatcCTTTGGcagatatttcttttttacaaaaccATTCAACACTACATGATCAAGTACTTTTGGCCCTAAAATTTGgttatttttaagattttatgaAGGTATATATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156132 lncRNA upstream 121 18454033 ~ 18454268 (+) False G115781
TU156073 lncRNA upstream 68420 18379112 ~ 18385969 (+) True G115733
TU156058 lncRNA upstream 156880 18296146 ~ 18297509 (+) True G115723
TU156034 lncRNA upstream 191728 18262396 ~ 18262661 (+) True G115705
TU156017 lncRNA upstream 220331 18233743 ~ 18234058 (+) True G115690
XR_005640622.1 lncRNA downstream 2561 18458181 ~ 18465450 (+) False LOC120567854
TU156136 lncRNA downstream 2620 18458240 ~ 18465361 (+) False LOC120567854
TU156137 lncRNA downstream 2620 18458240 ~ 18465426 (+) True LOC120567854
TU156146 lncRNA downstream 32911 18488531 ~ 18490186 (+) True G115793
TU156184 lncRNA downstream 145138 18600758 ~ 18602260 (+) False skila
XM_039815220.1 mRNA upstream 424 18394984 ~ 18453965 (+) True insra
XM_039815899.1 mRNA upstream 69418 18360882 ~ 18384971 (+) True mfsd14a2
XM_039815869.1 mRNA upstream 94159 18328259 ~ 18360230 (+) True myo9b
XM_039814931.1 mRNA downstream 10430 18466050 ~ 18479721 (+) True arhgef18a
XM_039814934.1 mRNA downstream 41071 18496691 ~ 18505667 (+) True dapk3
XM_039816544.1 mRNA downstream 66349 18521969 ~ 18556360 (+) True prkci
XM_039815518.1 mRNA downstream 111013 18566633 ~ 18602263 (+) True skila
XM_039815320.1 mRNA downstream 153593 18609213 ~ 18624575 (+) False nadkb
TU156065 other upstream 100045 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 424494 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1013926 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1927960 16439025 ~ 16526429 (+) False LOC120568419
TU156233 other downstream 216942 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 561438 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1061233 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1917615 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2427086 20882706 ~ 20915288 (+) False LOC120568904

Expression Profile