RNA id: TU156132


Basic Information

Item Value
RNA id TU156132
length 236
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G115781
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18454033 ~ 18455620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acatactgtacacatccCACGCAGTCACGTCATTGCTAtagatttaaatatatttttgttttttgttgtcattttataTAGATCACACTTTTATCACACTCTCTCTACATGAGCCCTTCAGTGCATAGCTCAGGACCTTATTTTTCTTCTCAGatgccacaaacacacactacagaAAGTCCACACATGTATGCCAGAAGAcacttttttgtatttatgGACGAACCTCCAGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156073 lncRNA upstream 68064 18379112 ~ 18385969 (+) True G115733
TU156058 lncRNA upstream 156524 18296146 ~ 18297509 (+) True G115723
TU156034 lncRNA upstream 191372 18262396 ~ 18262661 (+) True G115705
TU156017 lncRNA upstream 219975 18233743 ~ 18234058 (+) True G115690
XR_005640695.1 lncRNA upstream 220327 18232617 ~ 18233706 (+) True LOC120568296
TU156130 lncRNA downstream 121 18454389 ~ 18455620 (+) True G115781
TU156131 lncRNA downstream 121 18454389 ~ 18454787 (+) False G115781
XR_005640622.1 lncRNA downstream 3913 18458181 ~ 18465450 (+) False LOC120567854
TU156136 lncRNA downstream 3972 18458240 ~ 18465361 (+) False LOC120567854
TU156137 lncRNA downstream 3972 18458240 ~ 18465426 (+) True LOC120567854
XM_039815220.1 mRNA upstream 68 18394984 ~ 18453965 (+) True insra
XM_039815899.1 mRNA upstream 69062 18360882 ~ 18384971 (+) True mfsd14a2
XM_039815869.1 mRNA upstream 93803 18328259 ~ 18360230 (+) True myo9b
XM_039815868.1 mRNA upstream 93803 18328259 ~ 18360230 (+) False myo9b
XM_039815870.1 mRNA upstream 93803 18328260 ~ 18360230 (+) False myo9b
XM_039814931.1 mRNA downstream 11782 18466050 ~ 18479721 (+) True arhgef18a
XM_039814934.1 mRNA downstream 42423 18496691 ~ 18505667 (+) True dapk3
XM_039816544.1 mRNA downstream 67701 18521969 ~ 18556360 (+) True prkci
XM_039815518.1 mRNA downstream 112365 18566633 ~ 18602263 (+) True skila
XM_039815320.1 mRNA downstream 154945 18609213 ~ 18624575 (+) False nadkb
TU156065 other upstream 99689 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 424138 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1013570 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1927604 16439025 ~ 16526429 (+) False LOC120568419
TU156233 other downstream 218294 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 562790 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1062585 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1918967 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2428438 20882706 ~ 20915288 (+) False LOC120568904

Expression Profile