RNA id: TU156238


Basic Information

Item Value
RNA id TU156238
length 1297
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G115863
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18693005 ~ 18694301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAATATGTTAACTGACATCCACAACTACTAATGttcagtagggctgcacgattcagaaaatgtcacgattcaatatcaattttcgtagggctgtgttcgattgaagaaattcttagtcgactaacattcaactcattcaactgtatcgactaatcgattagttgatttaatcgacagatctgtaaatctgagtttctccgcaaagagtcatgcaaaaggatgcatatattgaataagataatgcctcctttgcatatttaaacacaacatttcagaaaacgtgtaatacaacaaataactgcCTTAATGAAAGTTATTAAAGTAGATTTCACGGTGATATCTATTAGgtaaaatgtcaacccttaattcttgtgtttaccagagatgtgctcgtacgtttcttggaaataagtcattcagcatgaaaaaagcatcaaacatgactaatcgactaaagaaatctaagttgactaagaccaaaacgaccgattagtcgactaatcgactaagagggagcagccctagattTTCGATTAAAAAACGAttctcaattaaaaaaaaaacgattcacagtatgtaaatgtagtgacTTTTctcatgtgattgcagtagacgtacaataaaaaatgtattaaaatttttttttcggtagagcttgaatcgcgattcaaatgtgaatcgatttttgcaCACCTACTGTCCAGGCAACACTGtttattaaaggaatagtttagcattttttaagtggggttcTATGAGGTACCTATGCATAGTTATGGAGATGGCGATGAGTGCAGTCACTATAAGGAGATGGGGGAGATGTCACTGTAGCAGAAGTCATCCTTGTACTGTGGAGGTGAGtagaaaaaaagcctttttaccACATAGGAAATGCTTacctaaaataataataaatgtctgttcAAATGTACACAAAATGTTGTCTCTGCTTTAGTTTGCCGCcagacagacatttatttttgcactttttttttttgaagtgtaGTTTCGGCCATATATTTCTGCACCAACTCCCCTGCTCTGATTTGGCGTGTTGAGTGATTCGCTGCACTCCACCAGCACAAGTTGGCATAGTAATACAGGGCTAAGGGACATCTCCCCCAAACTCCTTATAGTGAATGCACTAATCACCATCTCCATAAGGGAAAAGACTATGCATAGGTAGCTCATACAACCGCACTTCAAATATGCTGAGCTATCCTTTTAACTGTCTCTGCTACTAACAAACATTGCTCTATCTGTACACTTCTTAAGTTTTTGTCTCCTCTTCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640744.1 lncRNA upstream 884 18689634 ~ 18692121 (+) True LOC120568663
TU156236 lncRNA upstream 8540 18683714 ~ 18684465 (+) True G115862
TU156234 lncRNA upstream 8752 18683714 ~ 18684253 (+) False G115862
TU156224 lncRNA upstream 43201 18648774 ~ 18649804 (+) True G115856
TU156191 lncRNA upstream 46622 18632716 ~ 18646383 (+) True G115826
TU156239 lncRNA downstream 90 18694391 ~ 18694646 (+) True G115864
TU156255 lncRNA downstream 26064 18720365 ~ 18725428 (+) False LOC120568911
TU156276 lncRNA downstream 139242 18833543 ~ 18833742 (+) True G115889
TU156310 lncRNA downstream 148271 18842572 ~ 18842794 (+) True G115921
TU156312 lncRNA downstream 170825 18865126 ~ 18866134 (+) True G115923
XM_039816349.1 mRNA upstream 10586 18680600 ~ 18682419 (+) True LOC120568684
XM_039816350.1 mRNA upstream 10586 18680645 ~ 18682419 (+) False LOC120568684
XM_039816360.1 mRNA upstream 18865 18660429 ~ 18674140 (+) True LOC120568691
XM_039815325.1 mRNA upstream 67828 18614798 ~ 18625177 (+) False nadkb
XM_039816358.1 mRNA downstream 5181 18699482 ~ 18701227 (+) True LOC120568690
XM_039816359.1 mRNA downstream 5226 18699527 ~ 18701227 (+) False LOC120568690
XM_039816657.1 mRNA downstream 22057 18716358 ~ 18718511 (+) True apoda.1
XM_039816658.1 mRNA downstream 26066 18720367 ~ 18725447 (+) True LOC120568911
XM_039814844.1 mRNA downstream 36427 18730728 ~ 18737190 (+) True and2
TU156233 other upstream 18943 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 338661 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 663110 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1252542 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2166577 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 322757 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 822552 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1678934 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2188405 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 3176652 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile