RNA id: XM_039816658.1



Basic Information


Item Value
RNA id XM_039816658.1
length 905
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120568911
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18720365 ~ 18725447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTTCACCCGGCACCGCTCTAGCTTGGCTGTGTAGCTCGCTTTATTATACATATATGGTGTACCTTCTTTAGCTAATAATTTGATGTATTTTTGGCGATAAGACCTCGTGGTTTTGTTCATCGATGCCACTAAAGGATCAATCAAATTCGACCGTCGCCATGAAACCAGCAGTGGATGAGATGTTTCCTGAGGGCGCGGGACCGTACGTTGATCTGGATGAGGCTGGGGGAAGCACAGGACTGCTGATGGACCTGGCTGCCAATGAAAAGGCAGTTCACTGCGACTTCTTCAATGatTTTGAGGATCtgtttgatgatgatgacatcCAGTAACAGAGACTAACACGTCTTCAGAGTAATGATGGATGATATTCACACCACTCCACTTTTTTTTGGGTGGAAAGGAAACCAACCATTTACTGTCTAATGACATACAATTGCCTTTCATAGATGTCCTAGTTTCAGGCTTTTTTAAAACATCCTTCAAAAGTCGTGACCCGCTCCAGATGTTGTGAAATTCTTAACATCCCAAGGATTCCTTCATATATGGTATGTTAAAATTATGAGCTTGTATTGTGCTCATGTCTTCGACTGCTGCGGGATTGCAGGTTTCAGTGTGTTGGAGAACACCTGTTCAGAGCGTAATTATACATGTGATGGGCAGAGGCTCCATATGCTGTCGCCCTTAAACATGCTGCAGATGGCATATGATGAATGATGGTCTGCTAAAATGACTTAAATTATTTGTGTAACGTGcatgatagtcacatacagtacattctgTGTGTTTGGGTTTATAGCTGCAGTCCTGTTCCATCATTCATTTGCACCCGTGTACAGTAGTTATGCATCCACACTTGTATTTTTGTGgtcaaaaatcaataaatagcATTTTGTATAAAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156239 lncRNA upstream 25721 18694391 ~ 18694646 (+) True G115864
TU156238 lncRNA upstream 26066 18693005 ~ 18694301 (+) True G115863
XR_005640744.1 lncRNA upstream 28246 18689634 ~ 18692121 (+) True LOC120568663
TU156236 lncRNA upstream 35902 18683714 ~ 18684465 (+) True G115862
TU156234 lncRNA upstream 36114 18683714 ~ 18684253 (+) False G115862
TU156276 lncRNA downstream 108096 18833543 ~ 18833742 (+) True G115889
TU156310 lncRNA downstream 117125 18842572 ~ 18842794 (+) True G115921
TU156312 lncRNA downstream 139679 18865126 ~ 18866134 (+) True G115923
TU156330 lncRNA downstream 197306 18922753 ~ 18923170 (+) True G115931
TU156334 lncRNA downstream 206479 18931926 ~ 18933912 (+) True G115934
XM_039816657.1 mRNA upstream 1856 18716358 ~ 18718511 (+) True apoda.1
XM_039816358.1 mRNA upstream 19140 18699482 ~ 18701227 (+) True LOC120568690
XM_039816359.1 mRNA upstream 19140 18699527 ~ 18701227 (+) False LOC120568690
XM_039816349.1 mRNA upstream 37948 18680600 ~ 18682419 (+) True LOC120568684
XM_039816350.1 mRNA upstream 37948 18680645 ~ 18682419 (+) False LOC120568684
XM_039814844.1 mRNA downstream 5281 18730728 ~ 18737190 (+) True and2
XM_039816706.1 mRNA downstream 30759 18756206 ~ 18799833 (+) False LOC120568945
XM_039816704.1 mRNA downstream 30769 18756216 ~ 18799833 (+) False LOC120568945
XM_039816708.1 mRNA downstream 30770 18756217 ~ 18799833 (+) False LOC120568945
XM_039816707.1 mRNA downstream 30772 18756219 ~ 18799833 (+) True LOC120568945
TU156233 other upstream 46305 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 366023 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 690472 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1279904 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2193939 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 291611 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 791406 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1647788 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2157259 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 3145506 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile