RNA id: XM_039816653.1



Basic Information


Item Value
RNA id XM_039816653.1
length 778
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120568909
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18703064 ~ 18720587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gaggggacgGAGAACAGcaagctgcaggccctggagctctgtcagggcagcgacGTTTGGTAGATCAGTCACCCAGAAATggGTTGTGGTGATAAGATGAAGGCCATGCAGGTGATTTCCTTGactctgctgtctgtccttGCAGCCAGCGCTCAAGTGTTGAAGTCCGGAAAATGTCCTAAACCTGCTGTTCAAGCCGACTTTGATGCTTCCAGGTACCTTGGTAAGTGGTATGAGATCAAGAAGCTGCCAGCATTCTTCCAGAAAGGGGAGTGCagcactgccacctacagtctGAAGAGTCCTGGAGTCGTTGGGGTCCTCAACAGTGAGCTGCTTGATGATGGTACCATTAATTCTATCATCGGCTCTGCCAAGGCCAAGAACCCCGCTGAGCCTGCCAAGCTGGAGGTCTCTTTCTTTGAAGGATCTCCCCCTGGTCCCTACTGGGTGCTGTCCACCGACTACGAGGGTCACTCTCTGGTCTACGGCTGCACCGACTTCGGCCTGTTCCGCACAGAGTTTTCCTGGATCCTGAGTAGAGAGCCCACCCTGTCTGAGGAGACCGTAGAGGAGCTGCACGGCATCCTGTCCTCCGTCGGAGTCAATGTGGACAAGATGGTCCACACCATCCAGGATGAGACTTACTGCAGCGCCATGAACCAGTAAACGGAGACACTCCTGTTTCAGCCTGTAAGGCAGGGTGACTTAGATTCATGACATGACACACTATATGCTGTCTTCATGCAAAGTCAATGCAATAAACCTGTAAAACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156247 lncRNA downstream 11885 18689229 ~ 18691179 (-) True G115868
TU156242 lncRNA downstream 18820 18683606 ~ 18684244 (-) True G115867
XR_005640750.1 lncRNA downstream 39288 18662841 ~ 18663776 (-) True LOC120568692
TU156218 lncRNA downstream 81844 18620833 ~ 18621220 (-) True G115851
TU156215 lncRNA downstream 87792 18614801 ~ 18615272 (-) True G115848
TU156304 lncRNA upstream 128475 18834524 ~ 18834763 (-) True G115917
XR_005640745.1 lncRNA upstream 142014 18848063 ~ 18849606 (-) True LOC120568670
TU156340 lncRNA upstream 142017 18848066 ~ 18849587 (-) False LOC120568670
TU156341 lncRNA upstream 142017 18848066 ~ 18849168 (-) False LOC120568670
XR_005640747.1 lncRNA upstream 154664 18860713 ~ 18863108 (-) True LOC120568676
XM_039814523.1 mRNA downstream 47868 18647081 ~ 18655196 (-) True samd7
XM_039815327.1 mRNA downstream 56649 18628974 ~ 18646415 (-) True sec62
XM_039816415.1 mRNA downstream 98274 18603307 ~ 18604790 (-) True gpr160
XM_039817003.1 mRNA downstream 183000 18508455 ~ 18520064 (-) False phc3
XM_039816323.1 mRNA upstream 130623 18836672 ~ 18841174 (-) False ackr4a
XM_039816322.1 mRNA upstream 130623 18836672 ~ 18840083 (-) True ackr4a
XM_039815897.1 mRNA upstream 213150 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815896.1 mRNA upstream 213150 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815895.1 mRNA upstream 213150 18919199 ~ 18930384 (-) True si:ch211-106h4.6
XR_005640621.1 other downstream 208576 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 1594160 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1658002 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1661588 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1900800 16756331 ~ 16802264 (-) False epb41l3b
TU156258 other upstream 10833 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 138856 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 225925 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 515742 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 758651 19464700 ~ 19465380 (-) True G116138

Expression Profile