RNA id: TU156358



Basic Information


Item Value
RNA id TU156358
length 1236
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC120568972
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18931974 ~ 18935491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAAAAGATGCAGCAGCAGCCCGAGCCCGAGAGGAGCAGAGAGCTCGTGCAGCAGGAAgtgtgagagaggagggaagaccACTTAGAGAGAACAATGGGAGTAGAAGTTGAGACCATAAGACCAGGAGACGGAAAGACTTTTCCGAAGAAAGGACAGAATGTGTCCGTGCACTACGTTGGTACGCTGACAAATGGAAAGAAGTTTGACTCCTCCAGGGATAGAGGAGACCCCTTCAAATTCAAAATTGGACAGGGTCAAGTCATTCGTGCTTGGGATGAGGGTGTAGCTCAGATGAGCGTTGGCCAGGTGGCCAAGCTGACCTGCTCGCCGGACTATGCATATGGCGCTAAAGGATACCCACCCGTCATCCCAGGAAATTCCACTCTCATCTTTGAAGTGGAGCTGCTGGGTGTTTGTTGAATTTAAAGGTTACTTTTCACAGTTTCTCATTCCACCAACATCTGacataaaataattttaattaaaggtgctgtcggtagcatttaaaaacatgaataaatcaTTCTGGAAAGAATTCTGATATCTTGGTATTATTAAGACAAATTAGACTGAATTCTGGTGGTATTGTTGGTGCTAAAATGACacctggattaaaaaaaaaagtaaataaatagtatgactttttttcttcaaaatatgCTTATTTCTTCCAAGGTTTATGTGGCCTCCATTTTTACATTTGTCTGATAAATCTTTGACTTGTTCTTCAGCTGTTGGATAGCACATCAGATACATAATGGAATAACGGCAATAGACAAACTAACGTTAAaattctttaaaatacatttcttttgtgCCATAAAACAATCTTAACCGAATGGATCGCCTAATCTGAACCAGTGGCACTAAACCTGCACAGAACATCTTGTTCATATGTGGTTATTCCTCTGTCTTAACAATTAGTGTGAAACTGATTTTTAATGTCAAAAATGCACATGAAACACCTTTTTAATGAAAagcttgcttgtttgttttttgcataaatgtattcaaaagGTGCATTGAGTTGATGCCTTGAAACTTTGACAATAAACAGTAATAAGACGCTTAGATGCTTTGCCTTTTCTCTTTTTAGATTTTGAATCTTGGCCCTTATACTATACTCTTGGGTCTTTTTATTCATAACAAGTTAAAGGCCTTAGGTGTCCTTGTGTTATGTCATCAGGCTTAACATTTTCTGGTAATGTTTGACTTTGTGTCATCCATTAGAAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156345 lncRNA downstream 65890 18865226 ~ 18866084 (-) True G115944
XR_005640747.1 lncRNA downstream 68866 18860713 ~ 18863108 (-) True LOC120568676
XR_005640745.1 lncRNA downstream 82368 18848063 ~ 18849606 (-) True LOC120568670
TU156340 lncRNA downstream 82387 18848066 ~ 18849587 (-) False LOC120568670
TU156341 lncRNA downstream 82806 18848066 ~ 18849168 (-) False LOC120568670
TU156377 lncRNA upstream 43555 18979032 ~ 18980054 (-) True G115967
TU156380 lncRNA upstream 46827 18982304 ~ 18984875 (-) True G115969
XR_005640781.1 lncRNA upstream 110198 19045675 ~ 19115348 (-) False LOC120568774
XR_005640780.1 lncRNA upstream 110198 19045675 ~ 19115348 (-) True LOC120568774
XR_005640778.1 lncRNA upstream 126800 19062277 ~ 19063691 (-) True LOC120568773
XM_039815897.1 mRNA downstream 1590 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815896.1 mRNA downstream 1590 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815895.1 mRNA downstream 1590 18919199 ~ 18930384 (-) True si:ch211-106h4.6
XM_039815898.1 mRNA downstream 2628 18919199 ~ 18929346 (-) False si:ch211-106h4.6
XM_039816323.1 mRNA downstream 90800 18836672 ~ 18841174 (-) False ackr4a
XM_039814586.1 mRNA upstream 1905 18937382 ~ 18961367 (-) True si:ch211-106h4.4
XM_039816211.1 mRNA upstream 27778 18963255 ~ 18966775 (-) True LOC120568598
XM_039816449.1 mRNA upstream 183665 19119142 ~ 19127195 (-) False LOC120568757
XM_039816448.1 mRNA upstream 183665 19119142 ~ 19127195 (-) True LOC120568757
XM_039816459.1 mRNA upstream 225429 19160906 ~ 19166143 (-) True si:dkey-32m20.1
TU156342 other downstream 85697 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 213430 18716882 ~ 18718544 (-) True LOC120568909
XR_005640621.1 other downstream 437486 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 1823070 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1886912 17043126 ~ 17045062 (-) True G115406
TU156517 other upstream 286314 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 529223 19464700 ~ 19465380 (-) True G116138
TU156767 other upstream 858357 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 2072572 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 3326521 22261998 ~ 22263498 (-) False G116969

Expression Profile