RNA id: XM_039816746.1


Basic Information

Item Value
RNA id XM_039816746.1
length 1085
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC120568972
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18931974 ~ 18935491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATAAAACTAAAGAAAAAGATGCAGCAGCAGCCCGAGCCCGAGAGGAGCAGAGAGCTCGTGCAGCAGGAAgtgtgagagaggagggaagaccACTTAGAGAGAACAATGGGAGTAGAAGTTGAGACCATAAGACCAGGAGACGGAAAGACTTTTCCGAAGAAAGGACAGAATGTGTCCGTGCACTACGTTGGTACGCTGACAAATGGAAAGAAGTTTGACTCCTCCAGGGATAGAGGAGACCCCTTCAAATTCAAAATTGGACAGGGTCAAGTCATTCGTGCTTGGGATGAGGGTGTAGCTCAGATGAGCGTTGGCCAGGTGGCCAAGCTGACCTGCTCGCCGGACTATGCATATGGCGCTAAAGGATACCCACCCGTCATCCCAGGAAATTCCACTCTCATCTTTGAAGTGGAGCTGCTGGGTGTTTGTTGAATTTAAAGGTTACTTTTCACAGTTTCTCATTCCACCAACATCTGacataaaataattttaattaaaggtgctgtcggtagcatttaaaaacatgaataaatcaTTCTGGAAAGAATTCTGATATCTTGGTATTATTAAGACAAATTAGACTGAATTCTGGTGGTATTGTTGGTGCTAAAATGACacctggattaaaaaaaaaagtaaataaatagtatgactttttttcttcaaaatatgCTTATTTCTTCCAAGGTTTATGTGGCCTCCATTTTTACATTTGTCTGATAAATCTTTGACTTGTTCTTCAGCTGTTGGATAGCACATCAGATACATAATGGAATAACGGCAATAGACAAACTAACGTTAAaattctttaaaatacatttcttttgtgCCATAAAACAATCTTAACCGAATGGATCGCCTAATCTGAACCAGTGGCACTAAACCTGCACAGAACATCTTGTTCATATGTGGTTATTCCTCTGTCTTAACAATTAGTGTGAAACTGATTTTTAATGTCAAAAATGCACATGAAACACCTTTTTAATGAAAagcttgcttgtttgttttttgcataaatgtattcaaaagGTGCATTGAGTTGATGCCTTGAAACTTTGACAATAAACAGTAATAAGACGCTTA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156345 lncRNA downstream 66055 18865226 ~ 18866084 (-) True G115944
XR_005640747.1 lncRNA downstream 69031 18860713 ~ 18863108 (-) True LOC120568676
XR_005640745.1 lncRNA downstream 82533 18848063 ~ 18849606 (-) True LOC120568670
TU156377 lncRNA upstream 43541 18979032 ~ 18980054 (-) True G115967
TU156380 lncRNA upstream 46813 18982304 ~ 18984875 (-) True G115969
XR_005640781.1 lncRNA upstream 110184 19045675 ~ 19115348 (-) False LOC120568774
XR_005640780.1 lncRNA upstream 110184 19045675 ~ 19115348 (-) True LOC120568774
XR_005640778.1 lncRNA upstream 126786 19062277 ~ 19063691 (-) True LOC120568773
XM_039815897.1 mRNA downstream 1755 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815896.1 mRNA downstream 1755 18919199 ~ 18930384 (-) False si:ch211-106h4.6
XM_039815895.1 mRNA downstream 1755 18919199 ~ 18930384 (-) True si:ch211-106h4.6
XM_039815898.1 mRNA downstream 2793 18919199 ~ 18929346 (-) False si:ch211-106h4.6
XM_039816323.1 mRNA downstream 90965 18836672 ~ 18841174 (-) False ackr4a
XM_039814586.1 mRNA upstream 1891 18937382 ~ 18961367 (-) True si:ch211-106h4.4
XM_039816211.1 mRNA upstream 27764 18963255 ~ 18966775 (-) True LOC120568598
XM_039816449.1 mRNA upstream 183651 19119142 ~ 19127195 (-) False LOC120568757
XM_039816448.1 mRNA upstream 183651 19119142 ~ 19127195 (-) True LOC120568757
XM_039816459.1 mRNA upstream 225415 19160906 ~ 19166143 (-) True si:dkey-32m20.1
TU156342 other downstream 85862 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 213595 18716882 ~ 18718544 (-) True LOC120568909
XR_005640621.1 other downstream 437651 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 1823235 17039800 ~ 17108904 (-) False ly97.3
TU156517 other upstream 286300 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 529209 19464700 ~ 19465380 (-) True G116138
TU156767 other upstream 858343 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 2072558 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 3326507 22261998 ~ 22263498 (-) False G116969

Expression Profile