RNA id: TU156400



Basic Information


Item Value
RNA id TU156400
length 778
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC120568770
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19017039 ~ 19052242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATCATCTGCCAGAAATGCATAGATAAAGTTGTTAGCTGTGAGACATCTCAGAAGAATACTAACAATGAAGATAACTTGCACAGCCTTGGTGCTTCTCATCCAAACATTACAATGTTTGGCCTCAGATGATTCACCATTTCTACTAACTAACAAGGCCACTGGTttttgtttggttaaaaaaaataacttctgcTTTGACGTACGCTGGACAACTGGTGACCGACTACTGGTTTTGTGGTTCAGTAAGTGCCTGGGAGTCCAGGGGAAAAGTGTGGGAAGTGAAATAGGCCTCTACGATTGTGATGAAAACAGCGACCTCCAAAAGTGGGAATGCAAGAATGGAACAGTGCTCGCCCTCAAAGACCAAGAGCTTTACATTGAGCTCACTGCAGATAACACAGCAGTGCTCTCCAAAACAATAGGACCCAATAACCACCTCACAATCTCAGGGACCTCCAGTGGTGCTTGTGCAAGAACATACAGAGAACTTTACACTATTGGAGGAAATGCAAATGGTAGGCCCTGCATGTTTCCCTTCCTGTACAAAGACCAGTGGTACTCAGCCTGTACTGAGACTGACCAACGTTGGTGTGCAGTTCAAACTAGATATGAACATGAAGTCTGGGGCTACTGCCCAACTAACTCCAGAGAACACTGGAGCAAACACCCAACAGGAGCGTATTaccagctcaacacacaggcaGCTCTGACTTGGCCCCAGGCTGAAGCCAGCTGTAAACAGCAGGGGGCCTCCCTGCTCAGTATCACCGATCCTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156382 lncRNA upstream 31125 18985728 ~ 18985933 (+) True G115971
TU156334 lncRNA upstream 83146 18931926 ~ 18933912 (+) True G115934
TU156330 lncRNA upstream 93888 18922753 ~ 18923170 (+) True G115931
TU156312 lncRNA upstream 150924 18865126 ~ 18866134 (+) True G115923
TU156310 lncRNA upstream 174264 18842572 ~ 18842794 (+) True G115921
TU156470 lncRNA downstream 147789 19166515 ~ 19168570 (+) True G116042
TU156472 lncRNA downstream 154332 19173058 ~ 19174369 (+) True G116044
XR_005640783.1 lncRNA downstream 333363 19352089 ~ 19354967 (+) True LOC120568775
XR_005640777.1 lncRNA downstream 348754 19367480 ~ 19373819 (+) False LOC120568772
TU156504 lncRNA downstream 348907 19367633 ~ 19373820 (+) False LOC120568772
XM_039816430.1 mRNA upstream 3061 18988689 ~ 19013997 (+) True LOC120568749
XM_039816431.1 mRNA upstream 32182 18969309 ~ 18984876 (+) True LOC120568750
XM_039816432.1 mRNA upstream 32182 18969309 ~ 18984876 (+) False LOC120568750
XM_039815886.1 mRNA upstream 97015 18868082 ~ 18920043 (+) False si:ch211-106h4.9
XM_039815882.1 mRNA upstream 97015 18868082 ~ 18920043 (+) False si:ch211-106h4.9
XM_039816438.1 mRNA downstream 48724 19067450 ~ 19104441 (+) True LOC120568752
XM_039816439.1 mRNA downstream 48725 19067451 ~ 19104441 (+) False LOC120568752
XM_039816457.1 mRNA downstream 201479 19220205 ~ 19226563 (+) True clul1
XM_039816467.1 mRNA downstream 241469 19260195 ~ 19266270 (+) True adcyap1b
XM_039816468.1 mRNA downstream 241469 19260195 ~ 19266270 (+) False adcyap1b
TU156233 other upstream 342996 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 662714 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 987163 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1576595 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 2490629 16439025 ~ 16526429 (+) False LOC120568419
unassigned_transcript_559 other downstream 498127 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1354509 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1863980 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2852227 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 3589338 22608064 ~ 22612409 (+) False LOC120567968

Expression Profile