RNA id: XR_005640777.1


Basic Information

Item Value
RNA id XR_005640777.1
length 729
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC120568772
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19367480 ~ 19373820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttattgtaagtgcaatgataagttaaagtccaatatgaAACCATATGAATGTGAGTCCCAGCccaggttaggaaattaactaacaatgtaaaggtCATAGGCAGTGGGCCAAGTCCGTCTATCTCAAAACTTGTGTTGTTACCTTGTGGAATTGATTTGGCCAATCACGTTATTCGTTGAACCGGCGGCCATGAGTCTACAACCCAACCTGGAGAGACCGGTGTATCTCGGCAAGACAACATCAAGGCATAGAGCTGGGAGTAGATGAGACGCTCTCCTTGGTTGTTCGGGGCCATCATCCAATGCAGAGCGCAGAATCCGGACCTTGGAGACATTCTCATCATTGACGGGCAGTGGTTCAGCTACATCTGTCAGTGGTTGGGCTTCACCTACATAACAGAACAGacatggacaGGACAACATCATATCTCAACAACCACAGATGACCCATCTTGATCTATCGACCCCACCAACAGAACCTGGCCAAGAAAGCCCCAAAACTTCTGCACTTCCTCCCACATGctgctactgttttttttttaaatttattttctattattcTTAAATTTGCTATGAACCTTTGACCCCACACTCATATTGCACGGCCTTTTGCTACTTGTCCCCttgtttatttataatatgtctAGTAATGTCATCCACTTGCACTGATACACTATATTAATACAGTGTACATGCTGTCTGCAATGTTAATAAATAACTGCTTCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640783.1 lncRNA upstream 12513 19352089 ~ 19354967 (+) True LOC120568775
TU156472 lncRNA upstream 193111 19173058 ~ 19174369 (+) True G116044
TU156470 lncRNA upstream 198910 19166515 ~ 19168570 (+) True G116042
TU156382 lncRNA upstream 381547 18985728 ~ 18985933 (+) True G115971
TU156334 lncRNA upstream 433568 18931926 ~ 18933912 (+) True G115934
TU156526 lncRNA downstream 90881 19464700 ~ 19465381 (+) False emilin2a
TU156538 lncRNA downstream 113128 19486947 ~ 19487610 (+) True G116104
TU156539 lncRNA downstream 114879 19488698 ~ 19490213 (+) True G116105
TU156540 lncRNA downstream 116749 19490568 ~ 19491420 (+) True G116106
TU156541 lncRNA downstream 117807 19491626 ~ 19492329 (+) True G116107
XM_039816467.1 mRNA upstream 101210 19260195 ~ 19266270 (+) True adcyap1b
XM_039816468.1 mRNA upstream 101210 19260195 ~ 19266270 (+) False adcyap1b
XM_039816457.1 mRNA upstream 140917 19220205 ~ 19226563 (+) True clul1
XM_039816438.1 mRNA upstream 263039 19067450 ~ 19104441 (+) True LOC120568752
XM_039816440.1 mRNA downstream 73192 19447011 ~ 19465314 (+) True emilin2a
XM_039816469.1 mRNA downstream 136567 19510386 ~ 19513462 (+) True myl12.2
XM_039816471.1 mRNA downstream 136567 19510386 ~ 19513462 (+) False myl12.2
XM_039816463.1 mRNA downstream 205298 19579117 ~ 19592564 (+) True rgs20
XM_039816464.1 mRNA downstream 211751 19585570 ~ 19592564 (+) False rgs20
TU156400 other upstream 348754 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 693418 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 1013136 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 1337585 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1927017 17407491 ~ 17440463 (+) False LOC120568596
unassigned_transcript_559 other downstream 143034 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 999416 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1508887 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2497134 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 3234245 22608064 ~ 22612409 (+) False LOC120567968

Expression Profile