RNA id: TU156517



Basic Information


Item Value
RNA id TU156517
length 481
RNA type TUCP
GC content 0.55
exon number 3
gene id G116084
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19221791 ~ 19222726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAATGTTTGAAAGTTAGAGTAAGAAAGTCAGCGCTGTAGTTTTCATACCTTGGCATGGAAAGCGCCAAATCCCCTGCGGCAGGTGGAGGTGTAGAAGGATTTGCATGCATCCTTCAGACAGGGGCTGCACTCCTCCCACTCCGACTGCAGGGAGTCTTTACActgctcctctgcctcctccagCTTCTCGGTCACCTCCTTAGCCAGTTGGTCTGCCCCCTTCTTCTTGTCACTGCTGTGTCGGAGCGACTTCATGAGGTGTCCGTGCTTCTGCTCGTTCCTCCACATCACCTCCCTCATCTGCTTCACCCCGTACAGAGCTCTCCGCACCTCCTCATCCACCAGTTTCTCGCCATTCAGCGATAGCTGTTTTAAGGTGTCCTCCGAGACGCCTCTGGGTTGATCCTCTGGGGCAGAGTAAAGGACCCCCAGCGTCACCACCAGAACAACCAAACCGAGCAGAAGCTTCATTCTTGAGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156513 lncRNA downstream 148 19220715 ~ 19221643 (-) True G116080
TU156479 lncRNA downstream 53261 19166515 ~ 19168530 (-) True G116050
TU156480 lncRNA downstream 53299 19166515 ~ 19168492 (-) False G116050
TU156462 lncRNA downstream 75016 19130548 ~ 19146775 (-) True G116034
XR_005640781.1 lncRNA downstream 106443 19045675 ~ 19115348 (-) False LOC120568774
TU156518 lncRNA upstream 537 19223263 ~ 19223489 (-) True G116085
TU156515 lncRNA upstream 1102 19223828 ~ 19224080 (-) True G116082
TU156524 lncRNA upstream 187323 19410049 ~ 19410276 (-) True G116091
TU156634 lncRNA upstream 383939 19606665 ~ 19617420 (-) True G116182
XR_005640774.1 lncRNA upstream 408771 19631497 ~ 19632872 (-) False LOC120568771
XM_039816447.1 mRNA downstream 5541 19182182 ~ 19216250 (-) True colec12
XM_039816451.1 mRNA downstream 40423 19168623 ~ 19181368 (-) True stam
XM_039816459.1 mRNA downstream 55648 19160906 ~ 19166143 (-) True si:dkey-32m20.1
XM_039816449.1 mRNA downstream 94596 19119142 ~ 19127195 (-) False LOC120568757
XM_039816448.1 mRNA downstream 94596 19119142 ~ 19127195 (-) True LOC120568757
XM_039816450.1 mRNA upstream 4111 19226837 ~ 19255535 (-) True yes1
XM_039816443.1 mRNA upstream 243226 19465952 ~ 19485956 (-) False lpin2
XM_039816446.1 mRNA upstream 243226 19465952 ~ 19483022 (-) False lpin2
XM_039816442.1 mRNA upstream 243226 19465952 ~ 19483021 (-) False lpin2
XM_039816441.1 mRNA upstream 243226 19465952 ~ 19483021 (-) True lpin2
TU156358 other downstream 286314 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 375514 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 503247 18716882 ~ 18718544 (-) True LOC120568909
XR_005640621.1 other downstream 727303 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 2112887 17039800 ~ 17108904 (-) False ly97.3
TU156578 other upstream 241974 19464700 ~ 19465380 (-) True G116138
TU156767 other upstream 571108 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 1785323 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 3039272 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 3040397 22263123 ~ 22268559 (-) True G116969

Expression Profile