RNA id: TU156539


Basic Information

Item Value
RNA id TU156539
length 269
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G116105
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19488698 ~ 19490213 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGCCACTCAGATCAAAGACTCTCTTTACACCGTCCTTGCCATCAAAGATGTCCATGGTGTATTTGCCCTTGTCCTTCTCAGTGGGCTCATTGATTTTAAGCCAAAGCTGCTCTCCTGTGACTCCAGACTTAACTCTCTCTGAGGCGGCAATCTTAGCATCTTTTGGAGCCAACCAACACGCAGTTCCTCATTGTAATATGTGACCGTGGAGGAGAGGATGATGCCATGTTCAGTACTGACGACTGTGATTTCAGAGGAGGAGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156538 lncRNA upstream 1088 19486947 ~ 19487610 (+) True G116104
TU156526 lncRNA upstream 23317 19464700 ~ 19465381 (+) False emilin2a
TU156504 lncRNA upstream 114878 19367633 ~ 19373820 (+) False LOC120568772
XR_005640777.1 lncRNA upstream 114879 19367480 ~ 19373819 (+) False LOC120568772
TU156540 lncRNA downstream 355 19490568 ~ 19491420 (+) True G116106
TU156541 lncRNA downstream 1413 19491626 ~ 19492329 (+) True G116107
TU156542 lncRNA downstream 2977 19493190 ~ 19494336 (+) True G116108
TU156543 lncRNA downstream 4606 19494819 ~ 19495036 (+) True G116109
TU156544 lncRNA downstream 5363 19495576 ~ 19496099 (+) True G116110
XM_039816440.1 mRNA upstream 23384 19447011 ~ 19465314 (+) True emilin2a
XM_039816467.1 mRNA upstream 222428 19260195 ~ 19266270 (+) True adcyap1b
XM_039816468.1 mRNA upstream 222428 19260195 ~ 19266270 (+) False adcyap1b
XM_039816457.1 mRNA upstream 262135 19220205 ~ 19226563 (+) True clul1
XM_039816439.1 mRNA upstream 384257 19067451 ~ 19104441 (+) False LOC120568752
XM_039816469.1 mRNA downstream 20173 19510386 ~ 19513462 (+) True myl12.2
XM_039816471.1 mRNA downstream 20173 19510386 ~ 19513462 (+) False myl12.2
XM_039816463.1 mRNA downstream 88904 19579117 ~ 19592564 (+) True rgs20
XM_039816464.1 mRNA downstream 95357 19585570 ~ 19592564 (+) False rgs20
XM_039816212.1 mRNA downstream 113431 19603644 ~ 19615854 (+) True LOC120568599
TU156400 other upstream 469972 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 814636 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 1134354 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 1458803 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 2048235 17407491 ~ 17440463 (+) False LOC120568596
unassigned_transcript_559 other downstream 26640 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 883022 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1392493 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2380740 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 3117851 22608064 ~ 22612409 (+) False LOC120567968

Expression Profile