RNA id: TU156543


Basic Information

Item Value
RNA id TU156543
length 218
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G116109
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19494819 ~ 19495036 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTATTTCATCTTGTTGGTCTTCTCATGAGCAGCCTTCCAGCCTTCCTCTCCAGCAGAGGCCTTCTTGACATCCAAATAGTAGCCATTGACAGGAGTGCGGCCATTAAATGCAGGTGGCTCCCACAGGACCACGACAGAGGTGTCACGGACCTCCAGCACATGAAGACCAACAGGAGCACCTTGGAGGATAAACAGAGATAGTTTGAACGATGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156542 lncRNA upstream 483 19493190 ~ 19494336 (+) True G116108
TU156541 lncRNA upstream 2490 19491626 ~ 19492329 (+) True G116107
TU156540 lncRNA upstream 3399 19490568 ~ 19491420 (+) True G116106
TU156539 lncRNA upstream 4606 19488698 ~ 19490213 (+) True G116105
TU156538 lncRNA upstream 7209 19486947 ~ 19487610 (+) True G116104
TU156544 lncRNA downstream 540 19495576 ~ 19496099 (+) True G116110
TU156545 lncRNA downstream 1347 19496383 ~ 19497133 (+) True G116111
TU156546 lncRNA downstream 4840 19499876 ~ 19500075 (+) True G116112
TU156547 lncRNA downstream 5384 19500420 ~ 19501298 (+) True G116113
TU156548 lncRNA downstream 8093 19503129 ~ 19503833 (+) True G116114
XM_039816440.1 mRNA upstream 29505 19447011 ~ 19465314 (+) True emilin2a
XM_039816467.1 mRNA upstream 228549 19260195 ~ 19266270 (+) True adcyap1b
XM_039816468.1 mRNA upstream 228549 19260195 ~ 19266270 (+) False adcyap1b
XM_039816457.1 mRNA upstream 268256 19220205 ~ 19226563 (+) True clul1
XM_039816439.1 mRNA upstream 390378 19067451 ~ 19104441 (+) False LOC120568752
XM_039816469.1 mRNA downstream 15350 19510386 ~ 19513462 (+) True myl12.2
XM_039816471.1 mRNA downstream 15350 19510386 ~ 19513462 (+) False myl12.2
XM_039816463.1 mRNA downstream 84081 19579117 ~ 19592564 (+) True rgs20
XM_039816464.1 mRNA downstream 90534 19585570 ~ 19592564 (+) False rgs20
XM_039816212.1 mRNA downstream 108608 19603644 ~ 19615854 (+) True LOC120568599
TU156400 other upstream 476093 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 820757 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 1140475 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 1464924 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 2054356 17407491 ~ 17440463 (+) False LOC120568596
unassigned_transcript_559 other downstream 21817 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 878199 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1387670 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2375917 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 3113028 22608064 ~ 22612409 (+) False LOC120567968

Expression Profile