RNA id: TU156782


Basic Information

Item Value
RNA id TU156782
length 2624
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G116292
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19924212 ~ 19937413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAAGGTAAGAGAAAAACATGTTATTATAAGGGTGAACAAATTACATCAGAGTGGTTGTTACTTACATAGTCCTCAAACTTGGTGATCTCCTCCTCCAGAATGTCAGTGCCAACTTTGTCATCCTCAACCACGCAGTTGATCTGCAGCTTCTTGATGCCGTAGCCAACTGGCACCAGTTTGGATGCTCCCCACAGGAGCCCGTCCATCTGCACCGAGCGCACACACTCCTCCAGTTTCACCATATCAGTCTCATCACTGCCGAACAAGTCAATGTCATCGTCATCACCGCTTTGTGCAGAGTTTGGTTCTCCAGTTCCATGCTCTTCATGCGCGAAACCAGCTCCTGGTCTCCTGCATGCGAGGATGACTGTGTAGAGGGTCCATTGGCTCCTTCGTAGAAGCACTTCTCCGCCTCATCGTAGCGTTGTTTGTCAAACCAGATGTTCTCTGAGGCGAGGCACTGCAATCCACTCATGTTGGTACTGAGGGGGGAAGTcagtaaataatttatttaatatagcaccttttacagaaGAAAGTCACAAGAGTAAAATGTGTTAAAAGACCAAACaatgaatagaaataaaaaccgtaaaataaaaacaaacatgagaCAAAGGCCATTTTGAATAGGTAAGTTTTCAGCTGATTTCAACAGTGCCGAAGCCACCTAGGTTTATAAATAAGATACTGCAAAAAACATTGATCTGCATCCAAGAGTTTATCTACTAACCAACAGCCATGACCAGGCGTTTAGTCGTCACAGCCAACACAATCAGTAACAAGAAATGAGTGAAAGAACATTACTAGACGCTTGACAAGGACACCGTATATTACATGTTACAATATCATGCAGAGCCACAGACTGAGTTGCAGGTGAAATAGGGAGACACAAAACAAAGCGTAACGCAGACAGTTTCAACTATATACACAGTAAATGAATGGCAGAATAACAGTTTCtgtcaaataaaaagaaacattaaaacaaacgtGTAAAAAAACTACTGCATATATGCTTCACCTCCCTTCTCATTCTGCTGACATGTTAGCGCAGCAGACAAGCATCTACACATTCCTCAGTCAGTGAAACACAGTTGCCTGGTCTGCAAAGTCTGGATTATAGAACAAAAGGTTGGTCGCTGACCATTCAACACCCCCCTTAGTGATAGCAGAGGTGCACTTCATTGTGCGATTATCAAAGAGACCCAGTTTACTGTAACATGTCAGTAAACGATGGCATGGTGTACACTAATACTCCGGTGACACAAGGTCagacttgtgttaaaaaatgcaAGGGGCTGCATTGATGCAGGCGTAGATAAGACAAATTAAAGGCTTGTCAGATGCCATGACACTGCAGACCACTTTATAATACTCCACGACAGGACTTTGACACTGGAAAGTTATCACTGTGAAATATTTTTATCTTTAGTCACAATGATCACAAGATAAATAGTAGAAATACAGCAATAACATTACAAACAATCAACTGGCCACTGCAGCGCCTTGCGAGGATGTTTCATTGCGGCAAAAGTTGAGTGAGGTTTTGCTGAAGCCCTGTGTTGGCACCCCTGCTGAGTCAATGAATTGACCTCGtttaaatgataaataaaagattgtgcttttattttctcGAGTGCTTAAATTTGTCCAAATGTGGCctaaacaaaaaaactccaGAAAGGCTCATCTAAAaacttgcatttaaaaaaatattatacacATTGGCTCatttacaagcccatcaaagATAACAAAATAAGTGAAAGTTAAATCATTTTCTTTCATAGCTTTTACGTACTACTTTTGACCACATTTTAATAACTgatcaaaagaaaacaaaatatagGGGTGTCATTATTAAGCCTGGGCTACATTAGCATAACTGAAAAAGGCCACACAGAATGCATGAcgaacaaaataaacaaaaaacataaacgttaaataaaccaaaaacacacatcacGTCTCTGCCATTCCCTGTGTGAGATGTGCCATACTTCTCCCATCTGGGCTTGCTTTTCGTCTCAGAGAGGCCCCTCTTCCTCTGGGTCGGCCCCTTGCTGCCCTTGCCCCCCTGCTCGGTCTCCGAGGAGGTGCGGTTGCGTCCTCTACTGTATCGACGGTGGGGGGTTCCAGAGGCCTTCACGGTGGTGACAGGGTGCCCCGGATCCTGCTGTTGAGCAAGGCTGCGTCTAGACTGGAAGGTCATGTAGCCTCTGGTGTTTGGACTCCTCGGAGAGGAGGACAGCGGCCCGTTGCCATTAGAGGCGAGCCGCTGTTGGTAGTTGCTCTCGGCCTGCTCATAGGCGCTGCGATTGTACAAGATTCCCTCTGCCTGCATGCCCTGGAGGACGGGGCTTTGACCGTAGGAGCCGCTCGCTTCCCTGGAGGTGCTCAACCACTCCTCTTCAGCCCCAAAGCTGTGGCTCTCCGACAAACGTGTGCGTCGCGGCAGCCTCCCAAATGGGACTTTATCTCCGCTGATAGTGCTTCTCTCTAGAGTGGGATTATTACCCTGCCTGAAGGTCCCCACTGGTACAGCATGCTGAGGGGCTCCTCCTTGTTGACGGTTTGACCAAGACTGATCCATTTCTCTATTAAAGGAGTCTCTTTTCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156784 lncRNA downstream 41803 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 172018 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 244782 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 276089 19645322 ~ 19648123 (-) True G116181
TU156632 lncRNA downstream 283555 19639526 ~ 19640657 (-) True G116180
TU156823 lncRNA upstream 388236 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 450085 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 452944 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 643107 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 831222 20768635 ~ 20771028 (-) True G116484
XM_039814817.1 mRNA downstream 7349 19882902 ~ 19916863 (-) True LOC120567779
XM_039814818.1 mRNA downstream 128453 19793342 ~ 19795759 (-) True xcr1b.1
XM_039814819.1 mRNA downstream 128531 19793342 ~ 19795681 (-) False xcr1b.1
XM_039814821.1 mRNA downstream 129108 19793342 ~ 19795104 (-) False xcr1b.1
XM_039814724.1 mRNA downstream 132309 19789625 ~ 19791903 (-) True LOC120567744
XM_039814793.1 mRNA upstream 9827 19947240 ~ 19956332 (-) False LOC120567774
XM_039814792.1 mRNA upstream 9827 19947240 ~ 19956328 (-) True LOC120567774
XM_039814816.1 mRNA upstream 19367 19956780 ~ 19962763 (-) True ftr67
XM_039814825.1 mRNA upstream 26413 19963826 ~ 19967558 (-) True LOC120567785
XM_039814824.1 mRNA upstream 31003 19968416 ~ 19970892 (-) True LOC120567783
TU156767 other downstream 128503 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 458832 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 701486 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 988735 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1077935 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 1070636 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2324585 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2325710 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3492953 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3531207 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile